Ion-Mihai Tetcu 9da018b5cc Update biology/ncbi-toolkit to the latest release. ... Quoting from www.ncbi.nlm.nih.gov/blast/blast_whatsnew.shtml Major changes include: blastall now uses the new engine by default, resulting in significant performance improvements and enabling query concatenation for all program types. PR: ports/98570 Submitted by: maintainer Approved by: lawrance (mentor, implict)		2006-06-06 12:05:19 +00:00
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ariadne	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
artemis
avida	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
babel
belvu
biojava
blast
blat
chemeq
clustalw
coalesce
crimap	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
distribfold	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
dna-qc	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
dotter
embassy
emboss
fasta	Update to 21.u1.d1 (fixes fetch).	2006-05-07 13:04:20 +00:00
fasta3	- Update to 34.t25.d8 [1]	2006-06-05 21:18:23 +00:00
fastdnaml
finchtv
fluctuate
garlic	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
genpak
gff2ps	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
gperiodic	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
grappa	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
hmmer
jalview
kinemage
L-Breeder	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
lagan
lamarc
libgenome	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
lsysexp	- Add MASTER_SITE	2006-06-06 10:07:55 +00:00
mafft
migrate	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
molden	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
mopac
nab
ncbi-toolkit	Update biology/ncbi-toolkit to the latest release.	2006-06-06 12:05:19 +00:00
ortep3
p5-AcePerl	- Update to 1.89	2006-05-02 23:16:02 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Phylo	- Updated from 0.07 to 0.12	2006-05-19 23:18:32 +00:00
p5-bioperl
p5-bioperl-devel
p5-bioperl-run	Bioperl-run contain modules that provides a PERL interface to various	2006-05-02 21:30:08 +00:00
p5-bioperl-run-devel	Bioperl-run contain modules that provides a PERL interface to various	2006-05-02 21:31:43 +00:00
paml	- Update to 3.15	2006-05-20 18:52:19 +00:00
phylip
platon	- Satisfy portlint	2006-05-06 21:20:59 +00:00
povchem	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
primer3	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
protomol	Add protomol 2.0.3, OO, component based, framework for molecular	2006-05-05 20:09:54 +00:00
psi88
py-biopython
pymol	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
rasmol
recombine
ruby-bio
seaview
seqio
sim4	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
t_coffee
tinker	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
treepuzzle
treeviewx
tRNAscan-SE
wise	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
xdrawchem	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
xmolwt
Makefile	Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.	2006-05-13 16:48:15 +00:00