freebsd-ports

adun

- Chase math/gsl slib bump

2009-01-13 12:30:14 +00:00

ariadne

…

artemis

Bump portrevision due to upgrade of devel/gettext.

2008-06-06 13:08:29 +00:00

avida

- Update to 2.8.1

2008-10-23 14:13:37 +00:00

babel

…

belvu

…

biococoa

Bump portrevision due to upgrade of devel/gettext.

2008-06-06 13:08:29 +00:00

biojava

Reset nemoliu due to maintainer-timeouts and no response to email.

2008-12-08 06:43:50 +00:00

blast

- Remove conditional checks relevant only on FreeBSD 5.x and older

2009-01-05 17:27:29 +00:00

blat

- Remove USE_GCC where it can be satisfied with base compiler on following

2008-07-25 14:34:52 +00:00

boinc-simap

- Remove conditional checks relevant only on FreeBSD 5.x and older

2009-01-05 17:27:29 +00:00

chemeq

Migration from bison 1.x to 2.x

2007-10-17 10:13:01 +00:00

clustalw

- Update to 2.0.6

2008-04-29 12:58:52 +00:00

consed

Teach the building cluster that these ports are not to be build

2008-05-25 23:05:10 +00:00

crimap

…

distribfold

…

dna-qc

…

dotter

Umark BROKEN, stale distfile removed from ftp-master.

2008-01-27 11:26:35 +00:00

embassy

- Update to 5.0.0

2008-04-13 07:22:42 +00:00

emboss

- Replace SF with second working master site

2008-04-17 17:06:48 +00:00

fasta

- Update mastersite.

2008-04-18 15:36:54 +00:00

fasta3

- Update to 35.3.6

2008-04-10 08:09:10 +00:00

fastdnaml

…

finchtv

…

fluctuate

…

garlic

- Remove unneeded dependency from gtk12/gtk20 [1]

2008-04-19 17:56:05 +00:00

genpak

- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV

2008-07-25 09:08:42 +00:00

gff2ps

Bump portrevision due to upgrade of devel/gettext.

2008-06-06 13:08:29 +00:00

gmap

Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.

2008-08-21 06:18:49 +00:00

gperiodic

Bump portrevision due to upgrade of devel/gettext.

2008-06-06 13:08:29 +00:00

grappa

…

hmmer

…

jalview

Bump portrevision due to upgrade of devel/gettext.

2008-06-06 13:08:29 +00:00

kinemage

- Remove unneeded dependency from gtk12/gtk20 [1]

2008-04-19 17:56:05 +00:00

L-Breeder

Bump portrevision due to upgrade of devel/gettext.

2008-06-06 13:08:29 +00:00

lagan

- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV

2008-07-25 09:08:42 +00:00

lamarc

- Update to 2.1.3

2008-07-31 16:18:42 +00:00

libgenome

Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.

2008-08-21 06:18:49 +00:00

linux-foldingathome

…

lsysexp

Bump portrevision due to upgrade of devel/gettext.

2008-06-06 13:08:29 +00:00

mafft

- Chase fasta3 update

2008-04-01 22:24:51 +00:00

mapm3

MAPMAKER/EXP is a linkage analysis package designed to help construct primary

2008-04-06 04:49:05 +00:00

migrate

- Update to 3.0.3

2009-01-14 16:00:34 +00:00

molden

- Unbreak distinfo after portrevision bump

2009-01-09 19:31:49 +00:00

mopac

Add -lf2c, this is the correct dependency. Bump portrevision.

2008-08-22 22:20:05 +00:00

mrbayes

- Update maintainer's email address

2008-05-17 16:52:34 +00:00

mummer

MUMmer is a modular system for the rapid whole genome alignment of finished

2007-12-14 20:54:47 +00:00

muscle

- Update maintainer's email address

2008-05-17 16:52:34 +00:00

ncbi-toolkit

- Remove unneeded dependency from gtk12/gtk20 [1]

2008-04-19 17:56:05 +00:00

njplot

- Update maintainer's email address

2008-05-17 16:52:34 +00:00

ortep3

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

2009-01-07 16:34:27 +00:00

p5-AcePerl

- Remove conditional checks relevant only on FreeBSD 5.x and older

2009-01-05 17:27:29 +00:00

p5-Bio-ASN1-EntrezGene

- Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN.

2008-04-17 14:30:31 +00:00

p5-Bio-Das

- update to 1.10

2008-12-11 05:19:12 +00:00

p5-Bio-Phylo

Reset aaron's port maintainerships due to many maintainer-timeouts.

2008-04-29 05:27:09 +00:00

p5-bioperl

Fix plist with perl 5.8.9.

2009-01-14 15:10:02 +00:00

p5-bioperl-devel

- Unbreak

2008-10-21 15:24:46 +00:00

p5-bioperl-run

- Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN.

2008-04-17 14:30:31 +00:00

p5-bioperl-run-devel

- Mark as broken

2008-12-16 16:13:11 +00:00

paml

- Update to 4.2

2008-12-25 19:56:07 +00:00

phd2fasta

Teach the building cluster that these ports are not to be build

2008-05-25 23:05:10 +00:00

phrap

Teach the building cluster that these ports are not to be build

2008-05-25 23:05:10 +00:00

phred

Teach the building cluster that these ports are not to be build

2008-05-25 23:05:10 +00:00

phylip

- Fix build

2008-08-27 16:21:06 +00:00

platon

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

2009-01-07 16:34:27 +00:00

povchem

…

primer3

- Update to 1.1.3

2008-04-04 20:46:35 +00:00

protomol

- Remove USE_GCC where it can be satisfied with base compiler on following

2008-07-25 14:34:52 +00:00

psi88

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

2009-01-07 16:34:27 +00:00

py-biopython

- Update to 1.48

2008-10-11 15:26:33 +00:00

pymol

- Add missing dependens

2008-03-27 11:20:17 +00:00

rasmol

- Remove unneeded dependency from gtk12/gtk20 [1]

2008-04-19 17:56:05 +00:00

recombine

…

ruby-bio

- Update to 1.1.0

2007-10-24 01:38:51 +00:00

seaview

- Remove unneeded dependency from gtk12/gtk20 [1]

2008-04-19 17:56:05 +00:00

seqio

- respect NOPORTEXAMPLES/NOPORTDOCS and fix plist

2008-07-12 06:28:25 +00:00

sim4

…

ssaha

- Fix plist files installation.

2008-06-21 02:46:21 +00:00

t_coffee

- Respect PORTDOCS/PORTEXAMPLES

2008-09-09 13:43:15 +00:00

tinker

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

2009-01-07 16:34:27 +00:00

treepuzzle

Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.

2008-08-21 06:18:49 +00:00

treeviewx

Bump portrevision due to upgrade of devel/gettext.

2008-06-06 13:08:29 +00:00

tRNAscan-SE

- Update MASTER_SITES and WWW: line

2008-05-22 00:49:42 +00:00

wise

…

xdrawchem

Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.

2008-08-21 06:18:49 +00:00

xmolwt

Bump portrevision due to upgrade of devel/gettext.

2008-06-06 13:08:29 +00:00

Makefile

- Delete biology/nab port after being marked DEPRECATED for three months

2008-07-24 12:17:12 +00:00