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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-24 00:45:52 +00:00
freebsd-ports/science
Thierry Thomas 3daa195fda Update to v2.0.0 and patch for clang.
PR:		ports/183454
Submitted by:	Jason Bacon <jwbacon (at) tds.net> (maintainer)
2014-01-29 21:44:59 +00:00
..
2d-rewriter
2dhf
abinit science/abinit: depends explicitly on "python" 2013-12-15 12:49:28 +00:00
afni Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
avogadro - Update from 1.1.0 to 1.1.1 2013-12-18 23:33:20 +00:00
bddsolve Convert LIB_DEPENDS for ports depending on boost 2013-12-12 14:15:03 +00:00
bft
bodr
brian Python cleanup: 2014-01-13 21:00:02 +00:00
buddy Reset maintainer for llwang@infor.org 2013-12-18 10:38:33 +00:00
cdcl
cdf - Implement staging. 2014-01-27 18:00:26 +00:00
cdo
cgnslib
checkmol
chemical-mime-data
chemtool
chemtool-devel science/chemtool-devel: Unbreak on FreeBSD 10+ 2013-12-25 22:08:13 +00:00
clhep
colt
crf++ Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
dcl
devisor
dlpoly-classic
dtiquery
ecs
elmer-eio
elmer-hutiter
elmer-matc science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate 2013-12-26 02:47:52 +00:00
elmer-meshgen2d
elmergrid
elmerpost science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate 2013-12-26 02:47:52 +00:00
epte
euler
fastcap
fasthenry
felt
fisicalab Update core GNUstep libraries and fisicalab to latest versions 2014-01-12 22:54:58 +00:00
flounder
fvcom
fvcom-mpi
fvm
g3data
gamess uncomment MANUAL_PACKAGE_BUILD. 2013-11-29 01:45:50 +00:00
gchemutils Add patch to unbreak with libc++ 10.0+. 2013-12-03 22:10:25 +00:00
gdis
getdp - Implement staging. 2014-01-27 15:15:04 +00:00
ghemical
ghmm Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
gnudatalanguage Python cleanup: 2014-01-13 21:00:02 +00:00
gramps Python cleanup: 2014-01-13 21:00:02 +00:00
gromacs - USES=fortran. 2013-12-27 16:39:52 +00:00
gsmc - Enable staging 2013-12-30 22:50:38 +00:00
gtamsanalyzer
gwyddion - Update from 2.33 to 2.34 2014-01-03 00:08:56 +00:00
h5utils
harminv
hdf New LIB_DEPENDS syntax, USES=fortran, staging. 2013-12-27 16:55:28 +00:00
hdf5
hdf5-18 - Fix PKGNAME collision 2013-12-11 18:38:53 +00:00
hdf-java - Convert to dos2unix.mk 2013-11-19 23:08:44 +00:00
hs-bio - Stagify lang/ghc and all the Haskell Cabal ports 2014-01-09 21:32:12 +00:00
InsightToolkit Now when it builds on 10.x, drop maintainership 2013-12-21 00:28:51 +00:00
isaac-cfd - USES=fortran gmake. 2013-12-27 20:26:21 +00:00
jmol
jstrack - Convert to USES=tk 2014-01-14 10:30:24 +00:00
kalzium - Update from 1.1.0 to 1.1.1 2013-12-18 23:33:20 +00:00
kst2 Add patches to fix build on 10 and head 2013-12-09 15:08:42 +00:00
lamprop
libctl
libghemical
libint
libkml - Update LICENSE 2013-12-26 21:48:54 +00:00
liblinear
liboglappth
libquantum
libsvm
libsvm-python
linsmith
massxpert
mbdyn
mcstas
medit
meep
mei - Upgrade to 1.0.4; 2013-11-26 21:30:22 +00:00
minc Part 2 at removing now useless FETCH_ARGS redifition 2014-01-03 01:12:59 +00:00
minc2 - Downgrade to the latest stable release; 2014-01-29 17:31:04 +00:00
mol2ps
mpb - New LIB_DEPENDS syntax. 2013-12-27 21:28:47 +00:00
mpqc
mpqc-mpich
ncs science/ncs: fix 'python' usage to remove implicity dependency of lang/python 2013-12-17 21:55:48 +00:00
netcdf
netcdf3-ftn
netcdf4 - Use CONFLICTS_INSTALL instead of CONFLICTS 2013-12-10 19:17:08 +00:00
netcdf-ftn - Remove LATEST_LINK 2013-12-10 19:18:39 +00:00
nifticlib Update to v2.0.0 and patch for clang. 2014-01-29 21:44:59 +00:00
openbabel Add upstream patch to fix the build with libc++. 2013-11-13 15:49:25 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Bond-Find - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Canonicalize - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-Mopac - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-File-PDB - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SLN - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMARTS - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMILES - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-VRML - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-XYZ - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-FormulaPattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-InternalCoords - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Isotope - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Reaction - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Ring - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-WebService-Elevation-USGS
p5-PerlMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Physics-Unit
paje
paraview Update freetype to 2.5.2. 2013-12-24 21:22:21 +00:00
peekabot Deprecate ports broken for more than 6 month 2014-01-27 17:35:26 +00:00
pnetcdf
psi3
psychopy
py-coards science/py-coards: Modernise and enable STAGE support 2014-01-26 00:52:15 +00:00
py-DendroPy
py-h5py science/py-h5py: update to 2.2.1 2013-12-13 19:59:42 +00:00
py-hcluster
py-mdp science/py-mdp: support staging 2013-12-29 11:39:54 +00:00
py-mlpy
py-netCDF4 science/py-netCDF4: support staging 2013-12-29 11:41:17 +00:00
py-obspy - Fix build with distribute -> setuptools change 2013-11-27 19:21:00 +00:00
py-paida
py-pupynere Python cleanup: 2014-01-13 21:00:02 +00:00
py-pyaixi Python cleanup: 2014-01-13 21:00:02 +00:00
py-pydap science/py-pydap: update to 3.1.1 2013-11-29 11:40:24 +00:00
py-pydicom
py-scikit-learn
py-scimath - Update WWW: 2013-11-20 20:51:25 +00:00
py-scipy - Fix distinfo 2013-11-18 15:36:42 +00:00
py-ws2300
pybrain
pycdf Python cleanup: 2014-01-13 21:00:02 +00:00
pynn
pyteomics Update to 2.2.1 2013-11-29 11:57:18 +00:00
pyteomics.biolccc Use PYDISTUTILS_AUTOPLIST 2014-01-23 08:42:15 +00:00
qcl
qtresistors - Convert to USES=qmake (and other USES while I'm here) 2013-11-22 12:55:00 +00:00
R-cran-AMORE - Update to 0.2.14 2014-01-09 12:11:14 +00:00
R-cran-bayesm - Update to 2.2.5 2014-01-09 12:36:23 +00:00
R-cran-DCluster Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-e1071 - Update to 1.6-2 2014-01-12 12:19:47 +00:00
R-cran-eco Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-Epi Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-epicalc Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-snow Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-som Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
ruby-dcl
ruby-gphys
ruby-netcdf
rubygem-ai4r
sigrok-cli - Update to 0.2.2 2014-01-27 19:15:36 +00:00
silo - Update from 4.9 to 4.9.1 2013-12-18 23:27:40 +00:00
simlib
step
svmlight Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
szip
udunits
v_sim
veusz - Update to 1.19.1 2013-12-22 14:33:44 +00:00
vmd
voro++
x11iraf
xfce4-equake-plugin
xmakemol
xmds
Makefile The sigrok project aims at creating a portable, cross-platform, 2014-01-03 00:13:11 +00:00