| .. |
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abyss
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biology/abyss: Update 2.3.5 → 2.3.7
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2023-07-22 01:55:01 -07:00 |
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ad2vcf
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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artemis
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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atac-seq
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biology/atac-seq: Add curl to metaport deps
|
2023-07-28 09:35:04 -05:00 |
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augustus
|
*/*: chase the upgrade of SuiteSparse
|
2023-10-15 11:03:17 +02:00 |
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avida
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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babel
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biology/babel: Update WWW
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2023-10-30 23:37:03 +01:00 |
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bamtools
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bamutil
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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barrnap
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biology/barrnap: Update descr
|
2022-11-24 19:12:18 -08:00 |
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bbmap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bcf-score
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biology/bcf-score: Unbreak build with clang 16
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2023-07-16 08:19:06 -05:00 |
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bcftools
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biology/bcftools: Update to 1.17
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2023-02-24 17:30:58 -06:00 |
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bedtools
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biology/bedtools: Update to 2.31.1
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2023-11-08 10:42:09 -06:00 |
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bfc
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bifrost
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biology/bifrost: Update to 1.3.0
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2023-10-11 07:31:57 -05:00 |
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bio-mocha
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biology/bio-mocha: Update to 1.16
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2023-01-05 17:21:03 -06:00 |
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bioawk
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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biococoa
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audio/opus: bump consumers after update to 1.4
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2023-04-25 17:17:15 +02:00 |
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biolibc
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biology/biolibc: Update to 0.2.6
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2023-10-28 06:21:35 -05:00 |
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biolibc-tools
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biology/biolibc-tools: Update to 0.1.4.13
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2023-10-29 17:41:02 -05:00 |
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bioparser
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biology/bioparser: update 3.0.15 → 3.1.0
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2023-08-29 00:32:45 -07:00 |
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biosig
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*/*: Update WWW to use HTTPS for sourceforge.net projects
|
2023-11-06 11:03:47 +01:00 |
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biosoup
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biology/biosoup: Install cmake files
|
2023-08-29 00:32:45 -07:00 |
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biostar-tools
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audio/opus: bump consumers after update to 1.4
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2023-04-25 17:17:15 +02:00 |
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bolt-lmm
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devel/boost*: bump all consumers after 1.83.0
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2023-09-27 17:36:30 +03:00 |
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bowtie
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*/*: Update WWW to use HTTPS for sourceforge.net projects
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2023-11-06 11:03:47 +01:00 |
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bowtie2
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biology/bowtie2: Update to 2.5.2
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2023-10-18 07:26:11 -05:00 |
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btllib
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biology/btllib: New port: Bioinformatics Technology Lab common code library
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2023-07-21 15:24:04 -07:00 |
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bwa
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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canu
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biology/canu: Fix build with llvm16
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2023-07-20 19:42:34 +02:00 |
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cd-hit
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biology/cd-hit: allow to build without GCC on libomp-less systems
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2023-08-12 03:37:47 +02:00 |
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cdbfasta
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biology/cdbfasta: Update to 2023.07.10
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2023-07-11 10:40:27 -05:00 |
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checkm
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all: remove explicit versions in USES=python for "3.x+"
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2023-06-27 21:34:34 +02:00 |
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chip-seq
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biology/chip-seq: Metaport for ChIP-Seq analysis
|
2023-06-14 16:23:37 -05:00 |
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clustal-omega
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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clustalw
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biology/clustalw: Unbreak build for clang 16
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2023-07-15 18:18:42 -05:00 |
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cufflinks
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devel/boost*: bump all consumers after 1.83.0
|
2023-09-27 17:36:30 +03:00 |
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cytoscape
|
biology/cytoscape: Broken on armv6, armv7
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2022-12-10 23:41:04 -08:00 |
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ddocent
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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diamond
|
biology/diamond: Update to 2.1.8
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2023-07-08 00:45:48 -03:00 |
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dsr-pdb
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devel/boost*: bump all consumers after 1.83.0
|
2023-09-27 17:36:30 +03:00 |
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edlib
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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emboss
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biology/emboss: Optionize mysql support
|
2023-10-29 23:53:39 +01:00 |
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erminej
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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exonerate
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fasda
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biology/fasda: Update to 0.1.5
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2023-10-28 06:32:20 -05:00 |
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fasta
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fasta3
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastahack
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastdnaml
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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fastool
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastp
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biology/fastp: Update to 0.23.4
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2023-05-31 10:40:00 -05:00 |
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fastq-trim
|
biology/fastq-trim: Update to 0.1.3
|
2023-10-28 06:34:21 -05:00 |
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fastqc
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biology/fastqc: Update to 0.12.1
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2023-03-04 18:17:20 -06:00 |
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fasttree
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastx-toolkit
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biology/fastx-toolkit: Unbreak build on 14-CURRENT
|
2023-03-07 11:28:13 -06:00 |
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figtree
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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flash
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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fluctuate
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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freebayes
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biology/freebayes: Drop redundant tabixpp dep
|
2023-01-22 10:42:34 -06:00 |
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garlic
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gatk
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biology/gatk: Update 4.3.0.0 → 4.4.0.0
|
2023-06-04 15:02:58 -07:00 |
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gcta
|
biology/gcta: Add temporary hack for building on aarch64
|
2023-10-15 06:49:05 -05:00 |
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gemma
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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generand
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gff2ps
|
biology/gff2ps: drop maintainership
|
2023-05-21 16:20:36 +00:00 |
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gffread
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gmap
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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gperiodic
|
accessibility/at-spi2-core: update to 2.46.0
|
2023-03-02 06:23:10 +01:00 |
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graphlan
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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groopm
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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haplohseq
|
devel/boost*: bump all consumers after 1.83.0
|
2023-09-27 17:36:30 +03:00 |
|
hhsuite
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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hisat2
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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hmmer
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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htslib
|
biology/htslib: fix build on armv7
|
2023-04-18 23:55:29 +02:00 |
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hyphy
|
biology/hyphy: Update to 2.5.56
|
2023-11-07 10:46:41 -04:00 |
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igv
|
audio/opus: bump consumers after update to 1.4
|
2023-04-25 17:17:15 +02:00 |
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infernal
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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iolib
|
*/*: Update WWW to use HTTPS for sourceforge.net projects
|
2023-11-01 23:11:47 +01:00 |
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iqtree
|
biology/iqtree: Update to 2.2.2.7
|
2023-09-04 23:45:37 -03:00 |
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jalview
|
biology/jalview: Fix build by using gradle-7.6.1 instead of gradle-8.0.1
|
2023-06-18 02:58:53 -07:00 |
|
jellyfish
|
biology/jellyfish: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:24:44 -06:00 |
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kallisto
|
biology/kallisto: Update to 0.50.1,1
|
2023-11-04 08:15:25 -05:00 |
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kmcp
|
biology/kmcp: update 0.9.3 → 0.9.4
|
2023-09-17 23:27:25 -07:00 |
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lamarc
|
biology/lamarc: Mark BROKEN on 14
|
2023-08-18 08:57:13 +02:00 |
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libbigwig
|
biology/libbigwig: Update 0.4.6 → 0.4.7
|
2023-07-17 00:09:00 -07:00 |
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libcombine
|
biology/libcombine: Fix build with libsbml 5.20.0
|
2023-05-27 12:24:05 +08:00 |
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libgff
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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libgtextutils
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
libneurosim
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all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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libnuml
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
libsbml
|
biology/libsbml: Update to 5.20.2
|
2023-09-30 08:44:19 +08:00 |
|
libsedml
|
biology/libsedml: Fix build with libsbml 5.20.0
|
2023-05-27 12:24:05 +08:00 |
|
linux-foldingathome
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
locarna
|
biology/locarna: Fix tests
|
2023-07-17 09:22:42 -07:00 |
|
mafft
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
mapm3
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
mashmap
|
biology/mashmap: disable on powerpc
|
2023-10-11 20:26:35 +02:00 |
|
megahit
|
biology/megahit: Add cmake patch to respect ports build flags
|
2022-11-24 08:10:13 -06:00 |
|
metaeuk
|
biology/metaeuk: Add NATIVE option
|
2023-07-14 17:31:14 -07:00 |
|
migrate
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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minimap2
|
biology/minimap2: Update to 2.25
|
2023-04-29 09:53:40 -05:00 |
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mmseqs2
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
molden
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
mothur
|
biology/mothur: Remove CC/CPP/CXX exports
|
2023-09-28 20:56:25 +02:00 |
|
mrbayes
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
mummer
|
*/*: Update WWW to use HTTPS for sourceforge.net projects
|
2023-11-06 11:03:47 +01:00 |
|
muscle
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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ncbi-blast+
|
biology/ncbi-blast+: Update to 2.14.1
|
2023-08-26 07:57:04 -05:00 |
|
ncbi-cxx-toolkit
|
graphics/proj: Update to 9.2.1
|
2023-07-26 21:58:55 +02:00 |
|
ncbi-entrez-direct
|
all: Bump PORTREVISION after lang/go* update
|
2023-09-08 09:34:56 -05:00 |
|
ncbi-toolkit
|
*/*: Bump jpeg-turbo users treewide
|
2023-07-28 19:13:17 +02:00 |
|
ncbi-vdb
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
ngs-sdk
|
biology/ngs-sdk: Update 2.11.2 → 3.0.1
|
2023-06-26 15:51:40 -07:00 |
|
p5-AcePerl
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-ASN1-EntrezGene
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Cluster
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Coordinate
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Das
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Das-Lite
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-DB-EMBL
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-DB-NCBIHelper
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-FeatureIO
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-GFF3
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Glite
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Graphics
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-MAGETAB
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-NEXUS
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Phylo
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-SCF
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Variation
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-BioPerl
|
biology/p5-BioPerl: Update to 1.007008
|
2023-10-11 20:57:41 +08:00 |
|
p5-BioPerl-Run
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-transdecoder
|
p5-transdecoder: Update to 5.7.1
|
2023-08-05 15:58:40 -05:00 |
|
p5-TrimGalore
|
biology/p5-TrimGalore: Fix build
|
2023-08-05 22:05:05 +02:00 |
|
paml
|
biology/paml: Update to 4.10.7
|
2023-07-08 00:46:53 -03:00 |
|
pbbam
|
biology/pbbam: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:25:09 -06:00 |
|
pbseqan
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
peak-classifier
|
biology/peak-classifier: Update to 0.1.4.13
|
2023-10-28 06:38:43 -05:00 |
|
pear-merger
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
phrap
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
phred
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
phyml
|
biology/phyml: fix build on non-x86
|
2023-05-08 10:25:50 +02:00 |
|
picard-tools
|
*/*: Refactor java/openjdk7 removal
|
2023-04-04 13:10:53 -05:00 |
|
plink
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
pooler
|
biology/pooler: Update to 1.88
|
2023-09-10 08:06:18 -05:00 |
|
primer3
|
biology/primer3: Fix build with llvm16
|
2023-08-05 20:55:50 +02:00 |
|
prodigal
|
biology/prodigal: Update 2.6.3-7 → 2.6.3-16
|
2023-07-22 00:37:33 -07:00 |
|
prodigy-lig
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
protomol
|
*/*: Update WWW to use HTTPS for sourceforge.net projects
|
2023-11-01 23:11:47 +01:00 |
|
psi88
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-bcbio-gff
|
biology/py-bcbio-gff: Update to 0.7.0
|
2023-03-16 17:32:06 -05:00 |
|
py-biom-format
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-biopython
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-biosig
|
*/*: Update WWW to use HTTPS for sourceforge.net projects
|
2023-11-06 11:03:47 +01:00 |
|
py-bx-python
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-crossmap
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-cutadapt
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-deeptools
|
biology/py-deeptools: Update to 3.5.2
|
2023-06-19 07:09:17 -05:00 |
|
py-deeptoolsintervals
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-dna-features-viewer
|
biology/py-dna-features-viewer: Update to 3.1.3
|
2023-11-04 17:11:34 -05:00 |
|
py-dnaio
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-ete3
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-Genesis-PyAPI
|
biology/py-Genesis-PyAPI: Add NO_ARCH
|
2023-08-01 00:42:07 +08:00 |
|
py-gffutils
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-goatools
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-gtfparse
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-hits
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-htseq
|
biology/py-htseq: Update to 2.0.4
|
2023-08-05 11:40:26 -05:00 |
|
py-libnuml
|
biology/py-libnuml: Allow build with swig 4.1.0+
|
2023-04-19 02:05:12 +08:00 |
|
py-libsedml
|
biology/py-libsedml: Allow build with swig 4.1.0+
|
2023-04-19 02:05:12 +08:00 |
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py-loompy
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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py-macs2
|
biology/py-macs2: Update to 2.2.9.1
|
2023-08-06 13:17:52 -05:00 |
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py-mrcfile
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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py-multiqc
|
biology/py-multiqc: Update to 1.15
|
2023-08-05 11:18:37 -05:00 |
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py-ont-fast5-api
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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py-orange3-bioinformatics
|
biology/py-orange3-bioinformatics: Change RUN_DEPENDS from py-requests-cache to py-requests-cache0
|
2023-08-01 00:42:07 +08:00 |
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py-orange3-single-cell
|
biology/py-orange3-single-cell: Add NO_ARCH
|
2023-08-01 00:42:07 +08:00 |
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py-pandas-charm
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-py2bit
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
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py-pybigwig
|
biology/py-pybigwig: Update to 0.3.21
|
2023-04-01 16:10:15 -05:00 |
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py-pyfaidx
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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py-pyrodigal
|
biology/py-pyrodigal: update 3.1.0 → 3.1.1
|
2023-11-07 09:56:52 -08:00 |
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py-pysam
|
biology/py-pysam: update 0.21.0 → 0.22.0
|
2023-10-06 03:09:08 -07:00 |
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py-PySCeS
|
biology/py-PySCeS: Update 1.1.0 → 1.1.1
|
2023-07-25 23:20:25 -07:00 |
|
py-python-libsbml
|
biology/py-python-libsbml: Use CMAKE_BUILD_PARALLEL_LEVEL env var for parallelization
|
2023-07-26 00:04:04 -07:00 |
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py-pywgsim
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-resdk
|
biology/py-resdk: update 19.0.1 → 20.0.0
|
2023-10-29 19:31:22 -07:00 |
|
py-scikit-bio
|
biology/py-scikit-bio: Update 0.5.8 → 0.5.9
|
2023-08-03 00:02:05 -07:00 |
|
py-valerius
|
biology/py-valerius: New port: Python bioinformatics tools
|
2022-10-03 21:06:22 -07:00 |
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py-xenaPython
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
pyfasta
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
python-nexus
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
rainbow
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
rampler
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
readseq
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
recombine
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
rna-seq
|
biology/rna-seq: Add biology/star dep to metaport
|
2023-07-31 09:36:06 -05:00 |
|
ruby-bio
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio
|
biology/rubygem-bio: Update to 2.0.5
|
2023-09-30 08:46:30 +08:00 |
|
rubygem-bio-executables
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio-old-biofetch-emulator
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio-shell
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
salmon
|
devel/onetbb: Update to 2021.10.0
|
2023-08-21 12:09:23 +02:00 |
|
sam2pairwise
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
samtools
|
biology/samtools: Update to 1.17
|
2023-02-24 17:27:21 -06:00 |
|
scrm
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seaview
|
*/*: Bump jpeg-turbo users treewide
|
2023-07-28 19:13:17 +02:00 |
|
seqan
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqan1
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqan3
|
biology/seqan3: update 3.2.0 → 3.3.0
|
2023-09-10 11:10:47 -07:00 |
|
seqan-apps
|
biology/seqan-apps: Fix build with llvm16
|
2023-08-06 23:53:04 +02:00 |
|
seqio
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqkit
|
all: Bump PORTREVISION after lang/go* update
|
2023-09-08 09:34:56 -05:00 |
|
seqtk
|
biology/seqtk: Update to 1.4
|
2023-05-23 17:42:13 -05:00 |
|
seqwish
|
biology/seqwish: Add comment
|
2023-11-05 15:07:52 -08:00 |
|
sigviewer
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
sim4
|
Remove WWW lines that have been moved into Makefiles
|
2022-09-08 17:46:38 +02:00 |
|
slclust
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
smithwaterman
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
snpeff
|
*/*: Update WWW to use HTTPS for sourceforge.net projects
|
2023-11-06 11:03:47 +01:00 |
|
spoa
|
biology/spoa: update 4.0.7 → 4.1.0
|
2023-08-29 09:59:01 -07:00 |
|
sra-tools
|
biology/sra-tools: Update to 3.0.6
|
2023-08-10 12:17:24 -05:00 |
|
stacks
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
star
|
biology/star: Fix SIMD issue on non-amd64
|
2023-08-21 09:33:20 -05:00 |
|
stringtie
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
subread
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
tabixpp
|
biology/tabixpp: Deprecate
|
2023-01-22 11:01:57 -06:00 |
|
taxonkit
|
all: Bump PORTREVISION after lang/go* update
|
2023-09-08 09:34:56 -05:00 |
|
treekin
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
treepuzzle
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
trimadap
|
biology/trimadap: drop GCC requirement on powerpc64le
|
2023-08-03 10:40:03 +00:00 |
|
trimmomatic
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
tRNAscan-SE
|
biology/tRNAscan-SE: Update to 2.0.11
|
2022-10-12 12:45:24 +01:00 |
|
ucsc-userapps
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
ugene
|
Mk/Uses: always use colon for build/run suffix
|
2022-09-11 12:20:14 +02:00 |
|
unikmer
|
all: Bump PORTREVISION after lang/go* update
|
2023-09-08 09:34:56 -05:00 |
|
vcf2hap
|
biology/vcf2hap: Update to 0.1.6.7
|
2023-10-28 06:44:44 -05:00 |
|
vcf-split
|
biology/vcf-split: Update to 0.1.5.10
|
2023-10-28 06:41:39 -05:00 |
|
vcflib
|
biology/vcflib: not for armv6/7
|
2023-07-31 01:59:09 +03:00 |
|
vcftools
|
biology/vcftools: Unbreak build with clang 16
|
2023-07-15 20:29:00 -05:00 |
|
velvet
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
viennarna
|
biology/viennarna: update 2.6.3 → 2.6.4
|
2023-11-03 15:02:11 -07:00 |
|
vsearch
|
*/*: Bump PORTREVISION for Ghostscript 10 change
|
2023-11-03 08:17:38 +01:00 |
|
vt
|
biology/vt: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:19:19 -06:00 |
|
wfa2-lib
|
biology/wfa2-lib: Update to 2.3.4
|
2023-09-29 13:24:07 -05:00 |
|
wise
|
*/*: Fix build with llvm16 on 13.2-STABLE
|
2023-07-26 02:48:20 +02:00 |
|
Makefile
|
biology/py-htseq: Python library for sequence analysis
|
2023-07-28 10:41:58 -05:00 |
