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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-23 04:23:08 +00:00
freebsd-ports/science
Emanuel Haupt 5005b67362 According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
2014-02-10 13:54:26 +00:00
..
2d-rewriter According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
2dhf
abinit
afni
avogadro Chase boost and icu bump 2014-02-07 11:44:08 +00:00
bddsolve Chase boost and icu bump 2014-02-07 11:44:08 +00:00
bft - Stage support 2014-02-03 09:44:35 +00:00
bodr
brian Python cleanup: 2014-01-13 21:00:02 +00:00
buddy
cdcl
cdf Fix a stage symlink. 2014-02-03 23:34:26 +00:00
cdo
cgnslib
checkmol
chemical-mime-data
chemtool
chemtool-devel
clhep
colt
crf++ Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
dcl
devisor
dlpoly-classic
dtiquery
ecs According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
elmer-eio - Stage support 2014-02-03 14:31:32 +00:00
elmer-hutiter
elmer-matc - Stage support 2014-02-03 13:57:46 +00:00
elmer-meshgen2d
elmergrid
elmerpost science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate 2013-12-26 02:47:52 +00:00
epte - Stage support 2014-02-06 10:41:38 +00:00
euler
fastcap
fasthenry
felt
fisicalab Update core GNUstep libraries and fisicalab to latest versions 2014-01-12 22:54:58 +00:00
flounder
fvcom
fvcom-mpi
fvm
g3data
gamess
gchemutils
gdis
getdp - Implement staging. 2014-01-27 15:15:04 +00:00
ghemical
ghmm Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
gnudatalanguage Python cleanup: 2014-01-13 21:00:02 +00:00
gramps Python cleanup: 2014-01-13 21:00:02 +00:00
gromacs - USES=fortran. 2013-12-27 16:39:52 +00:00
gsmc - Enable staging 2013-12-30 22:50:38 +00:00
gtamsanalyzer
gwyddion - Update from 2.33 to 2.34 2014-01-03 00:08:56 +00:00
h5utils
harminv
hdf New LIB_DEPENDS syntax, USES=fortran, staging. 2013-12-27 16:55:28 +00:00
hdf5
hdf5-18
hdf-java Back to the futur 2014-02-10 13:27:09 +00:00
hs-bio - Stagify lang/ghc and all the Haskell Cabal ports 2014-01-09 21:32:12 +00:00
InsightToolkit
isaac-cfd - USES=fortran gmake. 2013-12-27 20:26:21 +00:00
jmol
jstrack - Convert to USES=tk 2014-01-14 10:30:24 +00:00
kalzium
kst2 - Bump PORTREVISION for astro/cfitsio shlib change 2014-02-05 20:02:34 +00:00
lamprop
libctl
libghemical
libint
libkml - Update LICENSE 2013-12-26 21:48:54 +00:00
liblinear
liboglappth - Stage support 2014-02-03 14:31:32 +00:00
libquantum - Stage support 2014-02-03 13:57:46 +00:00
libsvm
libsvm-python
linsmith
massxpert
mbdyn
mcstas
medit
meep
mei
minc Part 2 at removing now useless FETCH_ARGS redifition 2014-01-03 01:12:59 +00:00
minc2 - Downgrade to the latest stable release; 2014-01-29 17:31:04 +00:00
mol2ps
mpb - New LIB_DEPENDS syntax. 2013-12-27 21:28:47 +00:00
mpqc
mpqc-mpich
ncs
netcdf
netcdf3-ftn
netcdf4
netcdf-ftn
nifticlib Update to v2.0.0 and patch for clang. 2014-01-29 21:44:59 +00:00
openbabel
p5-Algorithm-SVMLight Support staging. 2014-02-06 14:07:44 +00:00
p5-Chemistry-3DBuilder - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Bond-Find - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Canonicalize - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-Mopac - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-File-PDB - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SLN - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMARTS - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMILES - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-VRML - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-XYZ - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-FormulaPattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-InternalCoords - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Isotope - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Mok - Stage support 2014-02-01 14:41:07 +00:00
p5-Chemistry-Mol
p5-Chemistry-Pattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Reaction - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Ring - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-WebService-Elevation-USGS
p5-PerlMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Physics-Unit Support staging. 2014-02-06 14:10:06 +00:00
paje
paraview
peekabot Chase boost and icu bump 2014-02-07 11:44:08 +00:00
pnetcdf
psi3
psychopy
py-coards science/py-coards: Modernise and enable STAGE support 2014-01-26 00:52:15 +00:00
py-DendroPy
py-h5py
py-hcluster
py-mdp science/py-mdp: support staging 2013-12-29 11:39:54 +00:00
py-mlpy
py-netCDF4 science/py-netCDF4: support staging 2013-12-29 11:41:17 +00:00
py-obspy
py-paida
py-pupynere science/py-pupynere: Modernise: Enable STAGE, AUTOPLIST and more 2014-02-03 11:35:53 +00:00
py-pyaixi Python cleanup: 2014-01-13 21:00:02 +00:00
py-pydap
py-pydicom
py-scikit-learn
py-scimath
py-scipy
py-ws2300
pybrain
pycdf Python cleanup: 2014-01-13 21:00:02 +00:00
pynn
pyteomics
pyteomics.biolccc Use PYDISTUTILS_AUTOPLIST 2014-01-23 08:42:15 +00:00
qcl
qtresistors
R-cran-AMORE Fix DISTNAME 2014-02-01 14:02:24 +00:00
R-cran-bayesm Fix DISTNAME 2014-02-01 13:58:01 +00:00
R-cran-DCluster Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-e1071 - Update to 1.6-2 2014-01-12 12:19:47 +00:00
R-cran-eco Fix DISTNAME 2014-02-01 13:49:09 +00:00
R-cran-Epi Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-epicalc Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-snow Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-som Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
ruby-dcl
ruby-gphys
ruby-netcdf
rubygem-ai4r
sigrok-cli - Update to 0.2.2 2014-01-27 19:15:36 +00:00
silo
simlib
step
svmlight Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
szip
udunits
v_sim According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
veusz
vmd
voro++
x11iraf
xfce4-equake-plugin - Update to 1.3.4 2014-01-31 12:27:20 +00:00
xmakemol
xmds
Makefile The sigrok project aims at creating a portable, cross-platform, 2014-01-03 00:13:11 +00:00