| .. |
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abyss
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biology/abyss: Update 2.2.5 -> 2.3.0-3
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2021-04-18 13:19:56 -07:00 |
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ad2vcf
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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artemis
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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avida
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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babel
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all: Remove all other $FreeBSD keywords.
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2021-04-06 16:31:13 +02:00 |
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bamtools
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bbmap
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biology/bbmap: BBMap short read aligner, and other bioinformatic tools
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2021-04-18 11:21:29 -05:00 |
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bcftools
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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bedtools
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bioawk
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biococoa
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biolibc
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bioparser
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biosoup
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bolt-lmm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bowtie
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bowtie2
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biology/bowtie2: Add support for powerpc64le
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2021-04-18 10:53:14 -05:00 |
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bwa
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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canu
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cd-hit
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cdbfasta
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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checkm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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clustal-omega
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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clustalw
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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cufflinks
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cytoscape
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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ddocent
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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diamond
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biology/diamond: Update to 2.0.9
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2021-04-12 21:55:49 -03:00 |
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dsr-pdb
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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edlib
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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emboss
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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exonerate
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fasta
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fasta3
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fastahack
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastdnaml
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fastool
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastp
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastqc
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fasttree
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastx-toolkit
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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figtree
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fluctuate
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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freebayes
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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garlic
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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gatk
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gcta
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gemma
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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generand
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gff2ps
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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gmap
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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gperiodic
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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graphlan
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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groopm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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haplohseq
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hhsuite
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hisat2
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hmmer
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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htslib
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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hyphy
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biology/hyphy: Update to 2.5.30
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2021-04-07 22:54:50 -03:00 |
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igv
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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infernal
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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iolib
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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iqtree
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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jalview
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all: Remove all other $FreeBSD keywords.
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2021-04-06 16:31:13 +02:00 |
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jellyfish
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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kallisto
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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lamarc
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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libbigwig
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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libgtextutils
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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libsbml
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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linux-foldingathome
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all: Remove all other $FreeBSD keywords.
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2021-04-06 16:31:13 +02:00 |
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mafft
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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mapm3
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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migrate
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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minimap2
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biology/minimap2: Update to 2.18
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2021-04-11 14:18:02 -05:00 |
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molden
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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mopac
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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mothur
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biology/mothur: Update to 1.45.2
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2021-04-12 19:29:17 -05:00 |
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mrbayes
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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mummer
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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muscle
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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ncbi-blast+
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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ncbi-cxx-toolkit
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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ncbi-toolkit
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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ncbi-vdb
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biology/ncbi-vdb: Restore static libs installed with symlinks as shared libs are usually installed
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2021-04-12 11:03:14 -07:00 |
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ngs-sdk
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biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by explicit 'amd64' instead of $ARCH
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2021-04-15 10:01:31 -07:00 |
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p5-AcePerl
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-ASN1-EntrezGene
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-Cluster
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-Coordinate
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-Das
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-Das-Lite
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-DB-EMBL
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-DB-NCBIHelper
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-FeatureIO
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-GFF3
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-Glite
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-Graphics
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-MAGETAB
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-NEXUS
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-Phylo
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-SCF
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-Bio-Variation
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-BioPerl
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-BioPerl-Run
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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p5-transdecoder
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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p5-TrimGalore
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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paml
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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pbbam
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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pbseqan
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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pear-merger
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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phrap
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
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phred
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
phyml
|
Clean up some things
|
2021-04-15 10:31:56 +02:00 |
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picard-tools
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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plink
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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pooler
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
|
primer3
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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prodigal
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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prodigy-lig
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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protomol
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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psi88
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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py-bigwig
|
biology/py-bigwig: Python access to bigWig files using libBigWig
|
2021-04-12 18:24:20 -05:00 |
|
py-biom-format
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-biopython
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
py-bx-python
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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py-crossmap
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biology/py-crossmap: Lift over genomics coordinates between assemblies
|
2021-04-12 18:37:51 -05:00 |
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py-cutadapt
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-dnaio
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-ete3
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-Genesis-PyAPI
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-gffutils
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-gtfparse
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-hits
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-loompy
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-macs2
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-multiqc
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-orange3-bioinformatics
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-orange3-single-cell
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-pandas-charm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-pyfaidx
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-pysam
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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py-resdk
|
New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and Resolwe Bioinformatics
|
2021-04-19 21:22:01 -07:00 |
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py-scikit-bio
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
|
py-xenaPython
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
|
pyfasta
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
python-nexus
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rainbow
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
rampler
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
readseq
|
biology/readseq: Remove $FreeBSD$ tag inserted to silence portlint
|
2021-04-18 09:20:28 -05:00 |
|
recombine
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
ruby-bio
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio-executables
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio-old-biofetch-emulator
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio-shell
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
samtools
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
scrm
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
seaview
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqan
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqan1
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqan-apps
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqio
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqkit
|
biology/seqkit: Change WWW to the project URL (from GitHub URL)
|
2021-04-16 21:00:56 -07:00 |
|
seqtk
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
sim4
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
slclust
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
smithwaterman
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
snpeff
|
biology/snpeff: Improvements to Makefile and patches
|
2021-04-19 11:41:58 -05:00 |
|
spoa
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
stacks
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
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star
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One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
stringtie
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
subread
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
tabixpp
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
treekin
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
treepuzzle
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
trimadap
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
trimmomatic
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
tRNAscan-SE
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
ugene
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
vcf2hap
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
vcf-split
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
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vcflib
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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vcftools
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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velvet
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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viennarna
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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vsearch
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biology/vsearch: Update to 2.17.0
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2021-04-10 09:02:55 -05:00 |
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vt
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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wise
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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Makefile
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New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and Resolwe Bioinformatics
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2021-04-19 21:22:01 -07:00 |
