mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2024-11-25 00:51:21 +00:00
Code Issues Releases Activity
3381d4a544
freebsd-ports/biology
History
Tijl Coosemans 564a799c71 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)
2014-02-16 17:15:31 +00:00
..
ariadne
artemis Support stage 2014-01-20 23:06:48 +00:00
avida
babel Support stage 2014-01-15 22:44:13 +00:00
biococoa
biojava According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
blast Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
blat
boinc-simap Drop maintainership BOINC ports, old machine running them gave up. 2014-02-04 17:54:29 +00:00
chemeq Stage support 2014-01-18 15:55:42 +00:00
clustalw
consed According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
crux Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
embassy Reduce over inclusion of bsd.port.mk 2014-01-15 22:48:32 +00:00
emboss
fasta Reduce over inclusion of bsd.port.mk 2014-01-15 22:50:18 +00:00
fasta3 Mark as broken: Invalid checksum, seems like the software was rerolled 2014-01-03 19:46:05 +00:00
fastdnaml Support staging 2014-02-16 11:32:43 +00:00
finchtv According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
fluctuate Support staging 2014-02-16 11:35:00 +00:00
garlic
genpak According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer Stage support 2013-12-30 18:08:14 +00:00
iolib Support stage 2014-01-20 17:02:11 +00:00
jalview Fix properties on pkg-plist 2014-01-21 23:18:05 +00:00
lagan
lamarc - rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk 2013-12-30 20:55:18 +00:00
libgenome biology/libgenome: Fix build on dragonfly 2014-02-05 23:47:48 +00:00
libsbml Reduce over inclusion of bsd.port.mk 2014-01-15 22:50:50 +00:00
linux-foldingathome
mafft Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
mapm3 - Fix build with clang 2014-01-12 19:07:28 +00:00
migrate - Stagify; cleanup Makefile and reorder the knobs a bit 2014-01-29 12:08:29 +00:00
molden
mopac
mrbayes
mummer According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
muscle
ncbi-toolkit
njplot According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
ortep3
p5-AcePerl - Stage support 2014-02-10 06:56:52 +00:00
p5-Bio-ASN1-EntrezGene - add stage support 2014-01-06 09:57:19 +00:00
p5-Bio-Das - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite - fix pkg-plist 2014-01-30 07:34:25 +00:00
p5-Bio-GFF3 - Update to 1.9 2014-01-23 03:28:37 +00:00
p5-Bio-Glite - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS - Stage support 2014-01-31 12:47:06 +00:00
p5-Bio-Phylo - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-SCF - add stage support 2014-01-06 09:44:19 +00:00
p5-bioperl According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
p5-bioperl-run According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
paml According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
phd2fasta Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
phrap Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
phred Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
phylip
phyml - Stage support 2014-01-31 12:32:55 +00:00
platon
plink Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
plinkseq - Stage support 2014-01-31 12:33:11 +00:00
povchem
primer3
protomol Reduce over inclusion of bsd.port.mk 2014-01-15 22:51:26 +00:00
psi88
py-biopython Python cleanup: 2014-01-13 21:00:02 +00:00
pycogent
pyfasta - Convert to PYDISTUTILS_AUTOPLIST 2014-01-31 12:31:24 +00:00
pymol
python-nexus - Convert to PYDISTUTILS_AUTOPLIST 2014-01-31 12:30:39 +00:00
rasmol
recombine - Support staging 2014-02-16 11:39:42 +00:00
ruby-bio Reduce over inclusion of bsd.port.mk 2014-01-15 22:52:28 +00:00
seaview
seqan
seqio Support staging 2014-02-16 11:42:09 +00:00
seqtools Fix old makeplist bug. 2014-02-12 14:03:25 +00:00
sim4 Support staging 2014-02-16 11:43:07 +00:00
ssaha Deprecate ports unmaintained for which distillator is not able to find public distfiles 2014-02-07 18:50:30 +00:00
t_coffee
tinker
treepuzzle
treeviewx Stage support 2013-12-30 18:27:32 +00:00
tRNAscan-SE biology/tRNAscan-SE: Fix hardcoded perl path 2014-02-05 23:44:50 +00:00
ugene Unbreak the fetch: one of the documentation PDF files was rerolled. 2014-01-30 13:38:26 +00:00
velvet According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
wise biology/wise: Add dragonfly support 2014-02-05 23:42:06 +00:00
xmolwt
Makefile