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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-29 05:38:00 +00:00
freebsd-ports/science
2019-07-20 23:20:19 +00:00
..
2d-rewriter
abinit science/abinit: Fix libomp.so in LDFLAGS (this also might fix the breakage on 13) 2019-05-19 03:01:48 +00:00
afni science/afni: Upgrade to 19.1.20 2019-06-18 19:00:55 +00:00
agrum science/agrum: Update 0.15.0 -> 0.15.2 2019-07-20 20:56:16 +00:00
aircraft-datcom Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
ALPSCore science/ALPSCore: Fix OPENMPI2 spelling after r500723 2019-05-04 11:02:15 +00:00
antioch science/metaphysicl: Update 0.3.3 -> 0.5.0 2019-05-03 03:46:01 +00:00
apbs science/apbs: Fix license 2019-05-03 06:15:44 +00:00
atom Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
atompaw science/atompaw: Update 4.1.0.5 -> 4.1.0.6 2019-06-28 04:52:35 +00:00
avogadro2
avogadrolibs science/avogadrolibs: Update 1.92.0 -> 1.92.1 2019-05-11 18:10:31 +00:00
bagel Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
bddsolve
berkeleygw Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
bodr
brian
buddy
cdcl
cdf Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
cdo Cosmetic change 2019-06-27 20:03:54 +00:00
cgnslib Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
cgribex
checkmol
chemical-mime-data
chemps2 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
chemtool
chemtool-devel
chrono science/chrono: Broken on i386 2019-05-18 22:28:29 +00:00
clhep
clipper science/clipper: add USES=compiler:c++11-lang 2019-05-11 20:30:19 +00:00
code_saturne Switch to Python 3.6 and upgrade to v5.3.3. 2019-05-19 19:22:45 +00:00
colt
coordgenlibs
coot Clean up LIB_DEPENDS 2019-06-16 16:05:28 +00:00
cp2k Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
cp2k-data
crf++
dalton Fix the a ports that were broken but did not know it. 2019-05-03 13:58:33 +00:00
datawarrior
dcl Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
devisor
dftbplus science/dftbplus: Unbreak build with GCC 9 2019-07-03 10:05:47 +00:00
dkh Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
dlib-cpp Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
dlpoly-classic Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
drawxtl
dvc
eccodes Update to 2.13.0 2019-07-19 17:02:43 +00:00
elk Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
epte
erd Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
erkale - Update math/armadillo to 9.600.4 2019-07-17 20:00:42 +00:00
erkale-pseudopotentials
esys-particle science/esys-particle: Broken on 13-CURRENT 2019-05-18 22:58:19 +00:00
fastcap
fasthenry
fisicalab
fleur Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
fsom
fvcom Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
fvcom-mpi
gabedit Add compiler:c++11-lang to USES to fix the following on GCC-based systems: 2019-06-17 11:39:30 +00:00
gamess-us Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
gchemutils
gdma Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
getdp - Update to 3.2.0. 2019-07-03 23:55:47 +00:00
ghemical Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
ghmm
gnudatalanguage Update graphics/libgeotiff to 1.5.1 2019-06-27 19:57:33 +00:00
gpaw-setups
gramps
grib_api
gromacs science/gromacs: Update 2019.2 -> 2019.3 2019-06-15 19:35:27 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils
h5z-zfp science/h5z-zfp: Update 0.9.0 -> 1.0.1 2019-06-30 08:34:58 +00:00
harminv Update Guile to version 2.2.5, modern stable version, and fix dependent 2019-06-27 09:02:56 +00:00
hdf Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
hdf5 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
hdf5-18 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
healpix These ports now build on aarch64. 2019-05-03 21:06:51 +00:00
hypre science/hypre: Update 2.15.1 -> 2.16.0 2019-05-13 07:57:57 +00:00
iboview Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
InsightToolkit - Update devel/gdcm to 3.0.0. 2019-06-01 21:59:13 +00:00
isaac-cfd Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
jdftx Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
jmol science/jmol: Update 14.29.42 -> 14.29.46 2019-06-07 05:59:51 +00:00
jstrack science/jstrack: remove meaningless 85+ from USES tk 2019-06-12 16:16:10 +00:00
kalzium science/kalzium: fix build on GCC architectures 2019-07-19 09:35:46 +00:00
kim-api New port: science/kim-api: Framework for reliable, reproducible, portable molecular simulations 2019-07-19 17:51:08 +00:00
kst2
lammps Clean up LIB_DEPENDS 2019-06-16 16:05:28 +00:00
lamprop
latte devel/openmp: phase out 2019-05-08 16:05:53 +00:00
libaec
libccp4 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
libcint
libctl Update Guile to version 2.2.5, modern stable version, and fix dependent 2019-06-27 09:02:56 +00:00
libefp
libgeodecomp
libghemical Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
libgridxc Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
libint science/libint: Update 1-2-1 -> 1-2-1-15 2019-04-28 18:12:59 +00:00
libint2
libkml
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc New port: science/libvdwxc: Van der Waals density functional (DFT) library 2019-05-18 05:40:31 +00:00
libxc Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
liggghts Clean up LIB_DEPENDS 2019-06-16 16:05:28 +00:00
lm Update devel/protobuf to 3.8.0 2019-07-05 19:08:49 +00:00
luscus science/luscus: fix build with GCC-based architectures 2019-05-09 19:59:20 +00:00
madness Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
maeparser
massxpert science/massxpert: prepare for Qt 5.13 2019-07-13 12:50:04 +00:00
mbdyn Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
mcstas
mcstas-comps Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
mcxtrace
mcxtrace-comps
mdynamix Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
medit Fix on head by setting LLD_UNSAFE: 2019-04-24 19:35:06 +00:00
meep Update Guile to version 2.2.5, modern stable version, and fix dependent 2019-06-27 09:02:56 +00:00
metaf2xml
metaphysicl science/metaphysicl: Update 0.3.3 -> 0.5.0 2019-05-03 03:46:01 +00:00
minc2
mmdb2
mmtf-cpp
mol2ps
molgif Convert all Go ports to USES=go 2019-06-29 03:51:13 +00:00
molscript Clean up LIB_DEPENDS 2019-06-16 16:05:28 +00:00
molsketch
mpb Update Guile to version 2.2.5, modern stable version, and fix dependent 2019-06-27 09:02:56 +00:00
mpqc Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
msms
multiwfn Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
namd Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
ncnn science/ncnn: Fix grammar and spelling in pkg-descr 2019-07-20 22:13:56 +00:00
nest science/nest: Update 2.16.0 -> 2.18.0 2019-06-28 09:10:18 +00:00
netcdf Update to 4.7.0 2019-04-30 19:07:06 +00:00
netcdf-cxx
netcdf-fortran Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
nifticlib science/nifticlib: fix build 2019-06-08 19:24:18 +00:00
nwchem science/nwchem: Update 6.8.1.20190509 -> 6.8.1.20190606 2019-06-08 07:54:52 +00:00
nwchem-data
octopus Clean up LIB_DEPENDS 2019-06-16 16:05:28 +00:00
openbabel Prepare for powerpc-on-clang by deleting hard-coded tests for libstdc++.so 2019-07-12 02:25:07 +00:00
openkim Simplify architecture tests for 64-bit. Listing each ARCH is fragile; e.g., 2019-07-12 15:41:37 +00:00
openmx Chase devel/openmp expiration 2019-05-27 20:55:56 +00:00
opensim-core Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
opensph New port: science/opensph: Library and graphical tools for running SPH and N-body simulations 2019-05-26 04:08:09 +00:00
opsin science/opsin: Update 3.0.20190208 -> 3.0.20190223 2019-05-11 06:00:09 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.113 2019-06-22 21:50:07 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
pagmo2 New port: science/pagmo2: Platform to perform parallel computations of optimization tasks 2019-05-01 07:16:57 +00:00
paje
paraview science/paraview: fix build on GCC architectures 2019-07-19 20:34:28 +00:00
pcmsolver Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
PETSc science/PETSc: fix typo 2019-07-01 19:52:04 +00:00
pnetcdf Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
psychopy Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
pulseview
py-abipy
py-asdf
py-ase science/py-ase: Update 3.17.0 -> 3.18.0 2019-07-20 23:20:19 +00:00
py-avogadrolibs
py-cdo Update to 1.5.3 2019-06-25 20:52:05 +00:00
py-chempy
py-coards
py-DendroPy
py-dlib
py-eccodes-python Update to 0.9.2 2019-07-10 17:00:42 +00:00
py-geometer
py-gpaw science/py-gpaw: Update 1.5.1 -> 1.5.2 2019-05-09 20:12:51 +00:00
py-GPy science/py-GPy: Fix build by explicitly setting the path to libomp.so in xx_DEPENDS lines 2019-05-23 21:21:49 +00:00
py-GPyOpt
py-gsd
py-h5py
py-hcluster
py-kinematics
py-lifelines
py-MDAnalysis science/py-MDAnalysis: fix build 2019-06-29 10:28:48 +00:00
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod
py-netCDF4 Cleanup cython dependency. 2019-05-11 21:10:31 +00:00
py-obspy Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
py-oddt
py-OpenFermion
py-openpiv
py-paida
py-paramz science/py-paramz: Update 0.9.4 -> 0.9.5 2019-05-18 15:56:47 +00:00
py-phono3py Chase devel/openmp expiration 2019-05-27 20:55:56 +00:00
py-phonopy science/py-phonopy: Update 2.1.3 -> 2.1.4 2019-06-28 05:04:05 +00:00
py-pupynere
py-pyaixi
py-pydicom
py-PyFR Chase devel/openmp expiration 2019-05-27 20:55:56 +00:00
py-pygeodesy
py-pymatgen science/py-pymatgen: Update 2019.1.24 -> 2019.2.28 2019-05-08 05:49:01 +00:00
py-pymol
py-pyosf
py-PyQuante
py-pysal
py-pyteomics Update to 4.1.2 2019-06-09 16:52:36 +00:00
py-pyteomics.biolccc
py-qcelemental science/py-qcelemental: Update 0.4.1 -> 0.4.2 2019-06-19 08:14:24 +00:00
py-qcengine science/py-qcengine: Update 0.6.4 -> 0.7.1 2019-06-19 08:15:53 +00:00
py-qspin
py-quantities
py-rmf
py-rmsd science/py-rmsd: Fix license 2019-05-26 18:17:15 +00:00
py-ruffus New port: science/py-ruffus 2019-07-11 16:50:44 +00:00
py-ScientificPython
py-scikit-fuzzy
py-scikit-learn - Update to 0.20.3 2019-05-14 02:17:08 +00:00
py-scikit-sparse Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
py-scimath
py-scipy Update to 1.2.2 2019-07-07 19:14:54 +00:00
py-scoria
py-SimpleSpectral
py-spglib science/py-spglib: Update 1.12.2 -> 1.13.0 2019-07-06 03:01:12 +00:00
py-veusz science/py-veusz: fix build on GCC architectures 2019-07-18 11:26:50 +00:00
py-ws2300
pybrain
pycdf
pynn
qbox science/qbox: Update 1.67.2 -> 1.67.4 2019-06-20 22:06:56 +00:00
qcl
qmcpack devel/openmp: phase out 2019-05-08 16:05:53 +00:00
quantum-espresso Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
quantum-espresso-pseudopotentials
qwalk Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk - Update to 2.2-8 2019-07-07 12:32:58 +00:00
R-cran-DCluster
R-cran-e1071 - Update to 1.7-2 2019-07-07 12:51:23 +00:00
R-cran-eco
R-cran-Epi - Update to 2.37 2019-07-07 12:34:59 +00:00
R-cran-epicalc
R-cran-etm - Update to 1.0.5 2019-07-07 13:57:22 +00:00
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
simbody Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
simgrid New port: science/simgrid: Simulator of the behavior of large-scale distributed systems 2019-05-16 16:00:15 +00:00
simint
simlib
simsmith
smoldyn New port: science/smoldyn: Biochemical simulator for molecular diffusion, surface interactions 2019-06-09 03:26:15 +00:00
sparta science/sparta: fix build with GCC-based architectures 2019-04-24 18:27:08 +00:00
spglib
step KDE Applications: update to 19.04.3 2019-07-12 05:32:09 +00:00
svmlight
szip
teem Clean up LIB_DEPENDS 2019-06-16 16:05:28 +00:00
tfel
tinker science/tinker: Update 8.6.1 -> 8.7.1 2019-07-14 00:34:53 +00:00
udunits
v_sim Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
vipster
vmd
voro++
wannier90 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
wwplot New port: science/wwplot: Plotting tool for experimental physics classes 2019-07-20 16:51:13 +00:00
wxmacmolplt science/wxmacmolplt: fix build with GCC-based architectures 2019-05-20 20:09:32 +00:00
xcrysden Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
xdrawchem
xfce4-equake-plugin - Simplify XFCE MASTER_SITES usage 2019-06-19 16:14:27 +00:00
xmakemol
yoda
Makefile New port: science/ncnn: High-performance neural network inference framework 2019-07-20 21:57:30 +00:00