John Marino 3dccd45d14 science/gromacs: Upgrade version 4.6.5 => 5.0 ... PR: 191826 Submitted by: Ports Fury		2014-08-10 00:03:09 +00:00
..
2d-rewriter	- Update to 1.5	2014-06-05 19:36:14 +00:00
2dhf	Reset maintainership for ports not staged with no pending PR	2014-07-24 16:33:10 +00:00
abinit	Reset maintainership for ports not staged with no pending PR	2014-07-24 16:33:10 +00:00
afni	Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.	2014-07-15 16:51:34 +00:00
avogadro	Convert a bunch of USE_BZIP2 to USES=tar:bzip2	2014-07-29 18:41:15 +00:00
bddsolve
bft	Add USES=libtool and INSTALL_TARGET=install-strip	2014-07-08 15:24:14 +00:00
bodr	Convert a bunch of USE_BZIP2 to USES=tar:bzip2	2014-07-29 18:41:15 +00:00
brian	- Added STAGE support	2014-05-31 04:56:47 +00:00
buddy	Add DOCS option where PORTDOCS is in plist.	2014-07-16 03:18:26 +00:00
cdcl	- Update to 5.4.8	2014-05-22 15:46:16 +00:00
cdf	Remove NOPORTDOCS and NOPORTEXAMPLES.	2014-07-04 22:08:14 +00:00
cdo	- Update to 1.6.4	2014-07-04 02:49:34 +00:00
cgnslib	- Update to 1.8.12 (from science/hdf5-18)	2014-05-03 00:55:30 +00:00
cgribex	- Add cgribex 1.6.3	2014-04-29 13:28:31 +00:00
checkmol	Stagify.	2014-06-10 12:52:48 +00:00
chemical-mime-data	Remove indefinite articles and trailing periods from COMMENT, plus	2014-07-17 08:57:51 +00:00
chemtool	Remove NOPORTDOCS and NOPORTEXAMPLES.	2014-07-04 22:08:14 +00:00
chemtool-devel	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
clhep	science/clhep: Upgrade version 2.1.0.1 => 2.2.0.1 and stage	2014-07-31 18:08:53 +00:00
colt	Remove NOPORTDOCS and NOPORTEXAMPLES.	2014-07-04 22:08:14 +00:00
crf++	- Convert to USES=libtool	2014-07-08 15:18:44 +00:00
dcl	Remove NOPORTDOCS and NOPORTEXAMPLES.	2014-07-04 22:08:14 +00:00
devisor	Stagify.	2014-06-10 14:43:35 +00:00
dlpoly-classic	- Convert net/openmpi to USES=libtool and bump dependent ports	2014-07-14 16:51:44 +00:00
dtiquery	Modernize LIB_DEPENDS	2014-07-14 18:42:04 +00:00
ecs	Fix build with texlive	2014-07-21 21:57:18 +00:00
elmer-eio	Reset the 99 ports still listed under sylvio@	2014-06-11 18:55:29 +00:00
elmer-hutiter	Modernize LIB_DEPENDS	2014-07-14 18:42:04 +00:00
elmer-matc	Reset the 99 ports still listed under sylvio@	2014-06-11 18:55:29 +00:00
elmer-meshgen2d	Remove indefinite articles and trailing periods from COMMENT, plus	2014-07-17 08:57:51 +00:00
elmergrid	Remove indefinite articles and trailing periods from COMMENT, plus	2014-07-17 08:57:51 +00:00
elmerpost	Reset the 99 ports still listed under sylvio@	2014-06-11 18:55:29 +00:00
epte
fastcap	Repair instances, almost all courtesy of bf ;-), of spaces	2014-07-29 20:55:27 +00:00
fasthenry	Repair instances, almost all courtesy of bf ;-), of spaces	2014-07-29 20:55:27 +00:00
fisicalab	Bump PORTREVISION on more ports that depend on libgcrypt after the update	2014-08-05 22:13:29 +00:00
fvcom	science/fvcom: fix for LEGAL and correct install for mpi version	2014-07-27 19:14:43 +00:00
fvcom-mpi	science/fvcom-mpi: change prefix	2014-07-27 19:18:00 +00:00
fvm	- Convert net/openmpi to USES=libtool and bump dependent ports	2014-07-14 16:51:44 +00:00
g3data	Reset maintainership for ports not staged with no pending PR	2014-07-24 16:33:10 +00:00
gamess	Reset maintainership for ports not staged with no pending PR	2014-07-24 16:33:10 +00:00
gchemutils	When linking a library libA with a library libB using libtool, if libB.la	2014-04-23 13:25:16 +00:00
getdp	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
ghemical	- Stagify	2014-08-06 16:05:23 +00:00
ghmm	- Convert to USES=libtool	2014-07-08 14:50:22 +00:00
gnudatalanguage	- Switch graphics/GraphicsMagick to USES=libtool, drop .la files	2014-08-04 19:34:31 +00:00
gramps	- Update to version 3.4.8 (Latest Gtk2 version)	2014-07-27 14:05:33 +00:00
gromacs	science/gromacs: Upgrade version 4.6.5 => 5.0	2014-08-10 00:03:09 +00:00
gsmc
gtamsanalyzer	Bump PORTREVISION on more ports that depend on libgcrypt after the update	2014-08-05 22:13:29 +00:00
gwyddion	science/gwyddion: update 2.36 -> 2.37	2014-07-09 08:41:34 +00:00
h5utils	Remove indefinite articles and trailing periods from COMMENT, plus	2014-07-17 08:57:51 +00:00
harminv	- Support staging	2014-05-09 18:27:29 +00:00
hdf	- USES=libtool tar:bzip2	2014-07-08 14:49:02 +00:00
hdf5	- Mark MAKE_JOBS_UNSAFE	2014-05-24 06:50:24 +00:00
hdf-java	Convert GMAKE to MAKE_CMD	2014-06-25 05:35:31 +00:00
hs-bio
InsightToolkit
isaac-cfd
jmol
jstrack	Mark BROKEN: Checksum and size mismatch	2014-08-01 17:26:45 +00:00
kalzium	KDE/FreeBSD team presents KDE SC 4.12.5 and KDE Workspace 4.11.9!	2014-05-10 19:43:14 +00:00
kst2	- Update to 3.360	2014-05-04 15:37:11 +00:00
lamprop	science/lamprop: Upgrade version 1.3.3 => 1.5.0 and stage	2014-08-05 07:31:33 +00:00
libctl	Add DOCS option where PORTDOCS is in plist.	2014-07-16 03:18:26 +00:00
libghemical	- Switch to USES=libtool, drop .la files	2014-08-06 16:06:22 +00:00
libint	- Stagify	2014-08-06 16:06:55 +00:00
libkml	- Add SWIG option	2014-05-25 18:47:55 +00:00
liblinear	Remove indefinite articles and trailing periods from COMMENT, plus	2014-07-17 08:57:51 +00:00
liboglappth	- Add USES=libtool and INSTALL_TARGET=install-strip	2014-07-08 13:54:24 +00:00
libquantum	Convert to USES=libtool	2014-07-08 13:34:32 +00:00
libsvm	Remove indefinite articles and trailing periods from COMMENT, plus	2014-07-17 08:57:51 +00:00
libsvm-python	- Update to 3.18	2014-05-30 13:47:15 +00:00
linsmith	- maintain by hamradio as we have gsmc another smith charting program	2014-06-29 11:55:30 +00:00
massxpert	- Support staging.	2014-06-30 20:38:59 +00:00
mbdyn	Reset maintainership for ports not staged with no pending PR	2014-07-24 16:33:10 +00:00
mcstas	Remove indefinite articles and trailing periods from COMMENT, plus	2014-07-17 08:57:51 +00:00
medit	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
meep	- Convert net/openmpi to USES=libtool and bump dependent ports	2014-07-14 16:51:44 +00:00
mei	- Add USES=libtool	2014-07-07 21:57:42 +00:00
metaf2xml	Add DOCS option where PORTDOCS is in plist.	2014-07-16 03:18:26 +00:00
minc	Mark BROKEN: Fails to build	2014-05-18 15:42:09 +00:00
minc2	science/minc2: Unbreak, Upgrade version 2.0.18 => 2.2.00 and stage	2014-07-29 21:33:51 +00:00
mol2ps	Stagify.	2014-06-10 14:46:36 +00:00
mpb	Mark BROKEN: Fails to build	2014-05-18 15:40:13 +00:00
mpqc	- Bump PORTREVISION to force rebuild of .la file	2014-08-06 23:57:20 +00:00
mpqc-mpich
ncs	- Convert net/openmpi to USES=libtool and bump dependent ports	2014-07-14 16:51:44 +00:00
netcdf	Fix packaging with default options (without DOXYGEN)	2014-05-03 11:43:26 +00:00
netcdf-cxx	- Switch to USES=libtool, drop .la files	2014-08-05 20:04:58 +00:00
netcdf-fortran	Allow to build with texinfo from ports	2014-06-26 08:41:34 +00:00
nifticlib
openbabel	The FreeBSD x11@ and graphics team proudly presents	2014-04-16 18:28:47 +00:00
openkim	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
p5-Algorithm-SVMLight	Modernize LIB_DEPENDS	2014-07-14 18:42:04 +00:00
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB	- Pass maintainership to perl@	2014-05-22 15:02:27 +00:00
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR	- Update to 1.27	2014-06-25 12:14:23 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol
p5-Physics-Unit
paje	Bump PORTREVISION on more ports that depend on libgcrypt after the update	2014-08-05 22:13:29 +00:00
paraview	Bump PORTREVISION for jbigkit library version bump.	2014-06-22 16:46:17 +00:00
pnetcdf	- Convert net/openmpi to USES=libtool and bump dependent ports	2014-07-14 16:51:44 +00:00
psi3	Convert a bunch of USE_BZIP2 to USES=tar:bzip2	2014-07-29 18:41:15 +00:00
psychopy	- Enable stagedir support	2014-06-22 10:55:50 +00:00
pulseview	science/pulseview: Remove unnecessary RUN_DEPENDS	2014-08-03 16:16:21 +00:00
py-coards
py-DendroPy	- Support staging	2014-06-01 21:30:40 +00:00
py-h5py	science/py-h5py: Upgrade to 2.3.0	2014-06-09 05:07:54 +00:00
py-hcluster	science/py-hcluster: support stage	2014-06-26 14:27:46 +00:00
py-mdp	Convert all :U to :tu and :L to :tl	2014-05-05 09:45:36 +00:00
py-mlpy	- Added STAGE support	2014-05-31 13:56:17 +00:00
py-netCDF4	- Pass maintainership to submitter	2014-06-07 18:15:43 +00:00
py-obspy	- Remove easy_install dependency	2014-06-15 08:23:19 +00:00
py-paida	science/py-paida: support stage	2014-08-05 13:22:35 +00:00
py-pupynere
py-pyaixi
py-pydap	science/py-pydap: remove useless python knobs	2014-06-20 01:48:34 +00:00
py-pydicom	- Added STAGE support	2014-05-31 13:51:28 +00:00
py-scikit-learn	Update to versiob 0.15.0	2014-07-16 11:53:12 +00:00
py-scimath	- Add STAGE support	2014-05-31 13:54:24 +00:00
py-scipy	Fix packaging with pkg-install	2014-06-17 19:39:23 +00:00
py-ws2300	- Update to 1.9	2014-05-29 05:11:17 +00:00
pybrain	- Update to 0.3.2	2014-05-31 13:59:02 +00:00
pycdf	science/pycdf: support stage and use auto plist	2014-08-05 13:27:44 +00:00
pynn	remove NO_STAGE.	2014-06-10 14:48:43 +00:00
pyteomics
pyteomics.biolccc
qcl	- Update to 0.6.4	2014-05-17 10:53:20 +00:00
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-snow
R-cran-som
ruby-dcl	Remove NOPORTDOCS and NOPORTEXAMPLES.	2014-07-04 22:08:14 +00:00
ruby-gphys	Remove indefinite articles and trailing periods from COMMENT, plus	2014-07-17 08:57:51 +00:00
ruby-netcdf	Add DOCS option where PORTDOCS is in plist.	2014-07-16 03:18:26 +00:00
rubygem-ai4r
rubygem-netcdf	- Update to 4.3.2 (from science/netcdf4)	2014-05-03 03:17:19 +00:00
sigrok-cli	science/sigrok-cli: update to 0.5.0	2014-07-28 23:06:29 +00:00
sigrok-firmware	Add new port: science/sigrok-firmware	2014-08-03 22:37:51 +00:00
sigrok-firmware-fx2lafw	Add new port: science/sigrok-firmware-fx2lafw	2014-08-03 22:24:50 +00:00
sigrok-firmware-utils	Add new port: science/sigrok-firmware-utils	2014-08-03 22:09:07 +00:00
silo	- Add USES=libtool	2014-07-07 21:56:17 +00:00
simlib	Stagify.	2014-06-10 15:07:59 +00:00
simsmith	Java based Smith chart program. Performs single-frequency and sweep charting	2014-07-03 21:02:10 +00:00
step	KDE/FreeBSD team presents KDE SC 4.12.5 and KDE Workspace 4.11.9!	2014-05-10 19:43:14 +00:00
svmlight	In some straightforward cases, protect documentation behind	2014-08-04 03:40:14 +00:00
szip	- Add my LOCAL to MASTER_SITES	2014-04-29 13:28:25 +00:00
udunits	- Revert r362761	2014-07-25 07:35:24 +00:00
v_sim	- Add USES=libtool	2014-07-07 21:35:34 +00:00
veusz
vmd	Reset maintainership for ports not staged with no pending PR	2014-07-24 16:33:10 +00:00
voro++
x11iraf	Reset maintainership for ports not staged with no pending PR	2014-07-24 16:33:10 +00:00
xfce4-equake-plugin	- Fix checksum	2014-04-27 15:10:34 +00:00
xmakemol	Stagify.	2014-06-10 15:13:44 +00:00
xmds	Reset maintainership for ports not staged with no pending PR	2014-07-24 16:33:10 +00:00
Makefile	Add new port: science/sigrok-firmware	2014-08-03 22:37:51 +00:00