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freebsd-ports/biology
History
Sunpoet Po-Chuan Hsieh 44e3305c58 - Update to 0.38 
- Sort MAN3 and PLIST
2011-07-16 06:08:34 +00:00
..
adun
Update math/gsl to 1.15, and adjust PORTREVISION
2011-05-09 16:42:27 +00:00
ariadne
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
artemis
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
avida
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
babel
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
belvu
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
biococoa
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
biojava
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
blast
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
blat
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
boinc-simap
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
chemeq
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
clustalw
- Fix fetch
2010-12-21 00:12:22 +00:00
consed
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
crimap
Another bunch of deprecation: no more public distfiles and/or abandonware
2011-06-16 10:43:58 +00:00
crux
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
distribfold
- Use USERS and GROUPS
2011-06-27 17:50:37 +00:00
dna-qc
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
dotter
- Updated WWW: to a working link
2011-04-22 18:59:11 +00:00
embassy
Bump PORTREVISION after open-mofit update
2011-05-02 12:44:53 +00:00
emboss
- kick MD5
2011-07-02 11:33:17 +00:00
fasta
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
fasta3
- Update to 36.3.2 to fix distfile fetching on pointyhat
2011-01-26 20:26:36 +00:00
fastdnaml
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
finchtv
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
fluctuate
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
garlic
Update to 1.6. Web site has been moved.
2011-05-11 05:55:27 +00:00
genpak
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
gff2ps
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
gmap
- fix fetch: wget is not required for fetching
2010-12-12 08:10:05 +00:00
gperiodic
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
grappa
Update to GNU make 3.82 after numerous -exp runs.
2011-04-11 19:54:35 +00:00
hmmer
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
iolib
- Update to 1.12.5
2011-02-11 13:11:45 +00:00
jalview
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
kinemage
Another bunch of deprecation: no more public distfiles and/or abandonware
2011-06-16 17:33:07 +00:00
L-Breeder
Another bunch of deprecation: no more public distfiles and/or abandonware
2011-06-16 10:43:58 +00:00
lagan
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
lamarc
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
libgenome
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
libsbml
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
linux-foldingathome
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
lsysexp
Another bunch of deprecation: no more public distfiles and/or abandonware
2011-06-16 10:43:58 +00:00
mafft
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
mapm3
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
migrate
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
molden
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
mopac
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
mrbayes
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
mummer
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
muscle
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
ncbi-toolkit
Fix build with open-motif-2.3.3
2011-05-02 12:41:44 +00:00
njplot
Bump PORTREVISION after open-mofit update
2011-05-02 12:44:53 +00:00
ortep3
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
p5-AcePerl
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
p5-Bio-ASN1-EntrezGene
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
p5-Bio-Das
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
p5-Bio-Das-Lite
- Update to 2.11
2011-05-08 17:06:15 +00:00
p5-Bio-GFF3
- Update to 0.5
2011-06-10 08:12:40 +00:00
p5-Bio-Glite
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
p5-Bio-Graphics
- update to 2.24
2011-06-01 20:21:51 +00:00
p5-Bio-MAGETAB
- Update to 1.20
2011-07-13 06:48:25 +00:00
p5-Bio-NEXUS
- Use canonical format for FreeBSD.org MAINTAINER addresses
2010-12-25 16:55:41 +00:00
p5-Bio-Phylo
- Update to 0.38
2011-07-16 06:08:34 +00:00
p5-Bio-SCF
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
p5-bioperl
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
p5-bioperl-run
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
paml
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phd2fasta
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phrap
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phred
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phylip
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phyml
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
platon
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
povchem
Switch dependency on povray to povray-meta port.
2011-06-20 22:32:03 +00:00
primer3
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
protomol
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
psi88
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
py-biopython
- Update to 1.57
2011-05-24 09:06:29 +00:00
pycogent
- Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy
2011-06-25 07:21:20 +00:00
pyfasta
- Update to 0.4.3
2011-06-02 01:38:55 +00:00
pymol
update to 1.4.1
2011-05-09 04:36:54 +00:00
python-nexus
- Update to 0.8
2011-02-15 01:59:12 +00:00
rasmol
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
recombine
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
ruby-bio
- Fix pkg-plist, got the wrong version before
2010-12-30 23:08:47 +00:00
seaview
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
seqio
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
sim4
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
ssaha
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
t_coffee
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
tinker
- Update to 5.1.09
2011-01-31 11:45:44 +00:00
treepuzzle
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
treeviewx
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
tRNAscan-SE
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
velvet
Update to 1.1.04
2011-06-09 16:33:21 +00:00
wise
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
xdrawchem
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
xmolwt
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
Makefile
Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.
2011-04-22 08:51:24 +00:00