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and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. WWW: http://pycogent.sourceforge.net/ PR: ports/135863 Submitted by: Wen Heping <wenheping at gmail.com> |
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| .. | ||
| adun | ||
| ariadne | ||
| artemis | ||
| avida | ||
| babel | ||
| belvu | ||
| biococoa | ||
| biojava | ||
| blast | ||
| blat | ||
| boinc-simap | ||
| chemeq | ||
| clustalw | ||
| consed | ||
| crimap | ||
| crux | ||
| distribfold | ||
| dna-qc | ||
| dotter | ||
| embassy | ||
| emboss | ||
| fasta | ||
| fasta3 | ||
| fastdnaml | ||
| finchtv | ||
| fluctuate | ||
| garlic | ||
| genpak | ||
| gff2ps | ||
| gmap | ||
| gperiodic | ||
| grappa | ||
| hmmer | ||
| jalview | ||
| kinemage | ||
| L-Breeder | ||
| lagan | ||
| lamarc | ||
| libgenome | ||
| libsbml | ||
| linux-foldingathome | ||
| lsysexp | ||
| mafft | ||
| mapm3 | ||
| migrate | ||
| molden | ||
| mopac | ||
| mrbayes | ||
| mummer | ||
| muscle | ||
| ncbi-toolkit | ||
| njplot | ||
| ortep3 | ||
| p5-AcePerl | ||
| p5-Bio-ASN1-EntrezGene | ||
| p5-Bio-Das | ||
| p5-Bio-Glite | ||
| p5-Bio-Graphics | ||
| p5-Bio-Phylo | ||
| p5-bioperl | ||
| p5-bioperl-run | ||
| paml | ||
| phd2fasta | ||
| phrap | ||
| phred | ||
| phylip | ||
| platon | ||
| povchem | ||
| primer3 | ||
| protomol | ||
| psi88 | ||
| py-biopython | ||
| pycogent | ||
| pymol | ||
| rasmol | ||
| recombine | ||
| ruby-bio | ||
| seaview | ||
| seqio | ||
| sim4 | ||
| ssaha | ||
| t_coffee | ||
| tinker | ||
| treepuzzle | ||
| treeviewx | ||
| tRNAscan-SE | ||
| wise | ||
| xdrawchem | ||
| xmolwt | ||
| Makefile | ||