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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-22 00:35:15 +00:00
freebsd-ports/biology
Guido Falsi 642be1b81d - Make ports use the libc provided iconv implementation on 10-CURRENT
after r254273
- Fix a bunch of ports to properly work after this
- Mark converters/libiconv as IGNORE for systems with iconv in libc

Reviewed by:	bapt
Approved by:	portmgr (bapt)
Discussed with:	bapt, bsam (who both contributed ideas and code)
2013-09-04 18:06:07 +00:00
..
ariadne
artemis
avida - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
babel
biococoa Update to latest GNUstep core libraries. 2013-08-28 18:26:01 +00:00
biojava
blast
blat
boinc-simap
chemeq
clustalw
consed
crux
dotter
embassy
emboss - update libdg to 2.1.0 2013-08-09 14:05:52 +00:00
fasta
fasta3 - Update to 36.3.6 2013-07-19 14:08:02 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak - update libdg to 2.1.0 2013-08-09 14:05:52 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer - Convert to new perl framework 2013-08-03 08:45:51 +00:00
iolib - Update to 7.31.0 2013-07-11 16:26:26 +00:00
jalview
lagan - Convert to new perl framework 2013-08-03 13:44:00 +00:00
lamarc - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
libgenome biology/libgenome: Mark jobs unsafe 2013-08-14 09:53:39 +00:00
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
mrbayes
mummer
muscle
ncbi-toolkit - Make ports use the libc provided iconv implementation on 10-CURRENT 2013-09-04 18:06:07 +00:00
njplot
ortep3
p5-AcePerl - Add WWW 2013-08-29 17:16:52 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-Das-Lite - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-GFF3 - Pet portlint: remove blank line among *_DEPENDS 2013-08-06 13:03:54 +00:00
p5-Bio-Glite - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-Graphics - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-MAGETAB - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-NEXUS - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-Phylo - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-SCF - Convert to new perl framework 2013-08-06 08:50:49 +00:00
p5-bioperl - Convert to new perl framework 2013-08-06 08:50:49 +00:00
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
phyml - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
platon
plink
plinkseq
povchem
primer3 Make sure to respect CC and CXX, this fixes the build on head without gcc 2013-08-28 06:04:51 +00:00
protomol
psi88
py-biopython
pycogent
pyfasta
pymol
python-nexus
rasmol
recombine
ruby-bio
seaview - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
seqan Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes. 2013-08-17 16:27:24 +00:00
seqio
sim4
ssaha
t_coffee - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
tinker biology/tinker: Regenerate distinfo to unbreak fetch 2013-08-18 11:38:34 +00:00
treepuzzle
treeviewx
tRNAscan-SE - Convert to new perl framework 2013-08-03 08:45:51 +00:00
ugene - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
velvet
wise - Convert to new perl framework 2013-08-03 13:44:00 +00:00
xmolwt - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
Makefile - Disconnect ports removed in r325546 2013-08-29 02:28:57 +00:00