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ariadne
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Cleanup $() variables in ports Makefiles.
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2016-07-20 15:33:20 +00:00 |
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artemis
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- Fix shebangs
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2017-04-21 16:28:25 +00:00 |
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avida
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Mark various ports as broken on armv6: invokes x86 asm.
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2017-02-26 12:56:41 +00:00 |
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babel
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bcftools
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biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
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2016-05-26 20:28:55 +00:00 |
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bedtools
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biology/bedtools is not jobs safe
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2016-08-22 04:32:18 +00:00 |
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biococoa
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biojava
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- Mark it BROKEN
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2016-10-28 01:49:40 +00:00 |
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blat
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biology/blat: Fix build on DF (taken from dports)
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2016-12-18 04:46:53 +00:00 |
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bowtie
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- Fix shebangs
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2017-04-22 09:25:44 +00:00 |
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bowtie2
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Update devel/tbb to 2017.5
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2017-03-07 12:44:41 +00:00 |
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bwa
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Mark various ports broken on aarch64 and armv6.
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2017-01-31 03:40:46 +00:00 |
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cd-hit
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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cdbfasta
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Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
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2017-01-20 20:33:30 +00:00 |
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chemeq
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biology/chemeq: fix build on GCC (taken from dports)
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2016-12-18 04:22:26 +00:00 |
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clustalw
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Remove useless WRKSRC definitions.
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2016-05-25 15:43:34 +00:00 |
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consed
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- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with
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2016-09-05 19:23:42 +00:00 |
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crux
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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diamond
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biology/diamond: Update to version 0.8.38
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2017-04-21 14:46:07 +00:00 |
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emboss
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- update libgd to 2.2.2
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2016-07-20 09:33:31 +00:00 |
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fasta
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${RM} already has -f.
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2016-10-21 12:51:40 +00:00 |
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fasta3
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- Fix trailing whitespace in pkg-messages
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2016-05-19 11:09:14 +00:00 |
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fastdnaml
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fastool
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Never set WRKSRC when using USE_GITHUB.
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2017-01-03 18:12:13 +00:00 |
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fasttree
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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fastx-toolkit
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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fluctuate
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garlic
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gff2ps
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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gmap
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Mark various ports as broken on armv6: invokes x86 asm.
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2017-02-26 12:56:41 +00:00 |
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gperiodic
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Remove libintl.so.9 compatibility link that was added in r374303 to
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2016-12-08 19:52:19 +00:00 |
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grappa
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
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hmmer
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htslib
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Use USES=pathfix where applicable.
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2016-10-21 15:21:13 +00:00 |
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iolib
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Fix USE_GITHUB's GH_TAGNAME usage.
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2017-02-28 08:33:44 +00:00 |
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jalview
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
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jellyfish
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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lagan
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- Fix trailing whitespace in pkg-messages
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2016-05-19 11:09:14 +00:00 |
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lamarc
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biology/lamarc: Fix build on DF (taken from dports)
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2016-12-18 04:34:33 +00:00 |
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libgtextutils
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Use USES=pathfix where applicable.
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2016-10-21 15:21:13 +00:00 |
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libsbml
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Cleanup no longer needed CHMOD usage after r424898.
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2016-11-02 22:45:14 +00:00 |
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linux-foldingathome
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- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with
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2016-09-05 19:23:42 +00:00 |
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mafft
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
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mapm3
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
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migrate
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- Switch to options helpers
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2016-04-17 10:15:59 +00:00 |
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molden
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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mopac
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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mrbayes
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mummer
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muscle
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Mark various leaf ports broken on aarch64, and, where appropriate, other
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2016-11-11 09:31:02 +00:00 |
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ncbi-blast+
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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ncbi-toolkit
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Remove libjpeg.so.11 compatibility link that was added in r374303 to
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2016-12-08 16:39:11 +00:00 |
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njplot
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biology/njplot: Add site in MASTER_SITES because package builders are
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2016-11-28 15:19:42 +00:00 |
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p5-AcePerl
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Move -fPIC to where Linux puts it so it is limited to a single library.
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2017-02-13 22:43:58 +00:00 |
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p5-Bio-ASN1-EntrezGene
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- Add LICENSE
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2016-12-18 15:25:13 +00:00 |
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p5-Bio-Coordinate
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- Add p5-Bio-Coordinate 1.007001
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2016-12-19 15:54:39 +00:00 |
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p5-Bio-Das
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- Add LICENSE
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2016-12-18 15:25:18 +00:00 |
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p5-Bio-Das-Lite
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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p5-Bio-GFF3
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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p5-Bio-Glite
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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p5-Bio-Graphics
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Bump PORTREVISION for ports affected by the fix the last commit.
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2017-01-31 16:21:45 +00:00 |
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p5-Bio-MAGETAB
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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p5-Bio-NEXUS
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
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p5-Bio-Phylo
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- Add LICENSE_FILE
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2016-12-18 15:25:22 +00:00 |
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p5-Bio-SCF
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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p5-BioPerl
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- Fix shebangs
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2017-04-22 12:45:43 +00:00 |
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p5-BioPerl-Run
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Bump PORTREVISION for ports affected by the fix the last commit.
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2017-01-31 16:21:45 +00:00 |
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p5-transdecoder
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Never set WRKSRC when using USE_GITHUB.
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2017-01-03 18:12:13 +00:00 |
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paml
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Cleanup no longer needed CHMOD usage after r424898.
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2016-11-02 22:45:14 +00:00 |
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phrap
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phred
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phylip
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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phyml
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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plink
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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plinkseq
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biology/plinkseq: unbreak with clang 4.0
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2017-02-27 14:09:25 +00:00 |
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primer3
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protomol
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biology/protomol: Support build with C++11 (taken from dports)
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2016-12-18 05:34:42 +00:00 |
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psi88
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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py-biom-format
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Update email address to jrm@FreeBSD.org for ports that I maintain
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2016-09-23 21:42:02 +00:00 |
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py-biopython
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- Update to 1.68
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2016-09-23 01:54:45 +00:00 |
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pycogent
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- Update to 1.9 [1]
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2016-08-08 11:21:04 +00:00 |
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pyfasta
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
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python-nexus
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- Update to 1.42
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2017-03-01 07:00:37 +00:00 |
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recombine
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When there is a do-install target, do not use a post-install target, do
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2016-07-19 11:04:13 +00:00 |
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ruby-bio
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
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rubygem-bio
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Update to 1.5.1
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2017-02-06 23:03:17 +00:00 |
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samtools
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biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
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2016-05-26 20:28:55 +00:00 |
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seaview
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biology/seaview: Update version 4.6=>4.6.1
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2017-04-11 18:58:18 +00:00 |
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seqan
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- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]
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2016-09-14 19:38:58 +00:00 |
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seqan1
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When there is a do-install target, do not use a post-install target, do
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2016-07-19 11:04:13 +00:00 |
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seqan-apps
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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seqio
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seqtools
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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sim4
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slclust
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Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
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2017-01-20 20:33:30 +00:00 |
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ssaha
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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t_coffee
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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tinker
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
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treepuzzle
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treeviewx
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Mark the remaining ports depending on Google Code as DEPRECATED, with an
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2017-03-03 16:00:19 +00:00 |
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trimmomatic
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tRNAscan-SE
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Prevent collision with getline(3)
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2016-05-13 18:38:34 +00:00 |
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ugene
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- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL
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2017-01-09 13:16:49 +00:00 |
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vcftools
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Assume "pkg-config zlib" works after 9.x reached EOL
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2017-01-03 17:06:49 +00:00 |
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velvet
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wise
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Remove libintl.so.9 compatibility link that was added in r374303 to
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2016-12-08 19:52:19 +00:00 |
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xmolwt
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Remove libintl.so.9 compatibility link that was added in r374303 to
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2016-12-08 19:52:19 +00:00 |
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Makefile
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Move devel/rubygem-bio to biology/rubygem-bio
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2017-02-05 04:26:56 +00:00 |
