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63e653adaa
From [1] * What is new in gsl-2.7: * fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com) * fixed bug #60335 (spmatrix test failure, J. Lamb) * fixed bug #36577 * clarified documentation on interpolation accelerators (V. Krishnan) * fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M. Sitte) * fixed doc bug #59758 * fixed bug #58202 (rstat median for n=5) * added support for native C complex number types in gsl_complex when using a C11 compiler * upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6 * updated exponential fitting example for nonlinear least squares * added banded LU decomposition and solver (gsl_linalg_LU_band) * New functions added to the library: - gsl_matrix_norm1 - gsl_spmatrix_norm1 - gsl_matrix_complex_conjtrans_memcpy - gsl_linalg_QL: decomp, unpack - gsl_linalg_complex_QR_* (thanks to Christian Krueger) - gsl_vector_sum - gsl_matrix_scale_rows - gsl_matrix_scale_columns - gsl_multilarge_linear_matrix_ptr - gsl_multilarge_linear_rhs_ptr - gsl_spmatrix_dense_add (renamed from gsl_spmatrix_add_to_dense) - gsl_spmatrix_dense_sub - gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply - gsl_linalg_QR_UD: decomp, lssolve - gsl_linalg_QR_UU: decomp, lssolve, QTvec - gsl_linalg_QR_UZ: decomp - gsl_multifit_linear_lcurvature - gsl_spline2d_eval_extrap * bug fix in checking vector lengths in gsl_vector_memcpy (dieggsy@pm.me) * made gsl_sf_legendre_array_index() inline and documented - gsl_sf_legendre_nlm() [1] http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS PR: 256423 Exp-run by: antoine
116 lines
4.7 KiB
Makefile
116 lines
4.7 KiB
Makefile
PORTNAME= dakota
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DISTVERSION= 6.13.0
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PORTREVISION= 3
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CATEGORIES= science
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MASTER_SITES= https://dakota.sandia.gov/sites/default/files/distributions/public/
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Interface between analysis codes & iterative systems analysis methods
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LICENSE= LGPL21
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LICENSE_FILE= ${WRKSRC}/LICENSE
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LIB_DEPENDS= libblas.so:math/blas \
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libboost_system.so:devel/boost-libs \
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liblapack.so:math/lapack
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RUN_DEPENDS= bash:shells/bash
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USES= cmake compiler:c++11-lang fortran perl5 python shebangfix
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USE_LDCONFIG= yes
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SHEBANG_GLOB= *.sh *.py
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SHEBANG_FILES= interfaces/Python/mpitile \
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scripts/pyprepro/dprepro \
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scripts/pyprepro/pyprepro \
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scripts/dprepro.perl \
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test/dakota_test.perl
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CMAKE_ON= Boost_NO_BOOST_CMAKE \
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DAKOTA_GIT_checkout
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#CMAKE_ON+= HAVE_C3 # causes "duplicate include" error
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#CMAKE_ON+= DAKOTA_DL_SOLVER # fails to compile: error: declaration of anonymous class must be a definition
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#CMAKE_ON+= HAVE_NOWPAC # installs files into $PORTSDIR
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CMAKE_ON+= HAVE_DREAM HAVE_ADAPTIVE_SAMPLING HAVE_OPTPP DAKOTA_HOPS HAVE_ACRO \
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HAVE_JEGA HAVE_NOMAD HAVE_NPSOL HAVE_NL2SOL HAVE_DOT HAVE_SURFPACK \
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HAVE_CONMIN HAVE_DDACE HAVE_FSUDACE HAVE_PSUADE HAVE_ROL HAVE_DEMO_TPL # enable some methods that aren't enabled by default, see the list @ src/DakotaIterator.cpp
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CMAKE_OFF= DAKOTA_ENABLE_TESTS
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CMAKE_ARGS= -DDakota_VERSION_SRC:STRING=${DISTVERSION} -DDakota_GIT_REVL:STRING=${GIT_HASH} -DDakota_RELEASE_DATE:${STRING}=20201116
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FFLAGS+= -fallow-argument-mismatch
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LDFLAGS+= -lexecinfo
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CONFLICTS_BUILD= dakota # self: picks up some bundled packages from the pre-installed dakota package and then fails to install them
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CONFLICTS_INSTALL= openblas
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USES_GIT= no
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GIT_URL= https://software.sandia.gov/git/dakota
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GIT_HASH= 82fd55ea1c6bb6d32e4c68e7f92d991d658ba90a
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.if ${USES_GIT} == "yes"
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FETCH_DEPENDS= git:devel/git
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do-fetch:
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@if [ "${FORCE_FETCH_ALL}" = "true" ] || ! [ -f "${DISTDIR}/${DIST_SUBDIR}/${DISTNAME}${EXTRACT_SUFX}" ]; then \
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${MKDIR} ${DISTDIR}/${DIST_SUBDIR} && \
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cd ${DISTDIR}/${DIST_SUBDIR} && \
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git clone -q ${GIT_URL} ${PORTNAME}-${DISTVERSIONFULL} && \
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(cd ${PORTNAME}-${DISTVERSIONFULL} && \
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git checkout devel && \
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git submodule init packages/external && \
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git submodule init packages/pecos && \
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git submodule init packages/surfpack && \
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git submodule update) && \
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(cd ${PORTNAME}-${DISTVERSIONFULL} && git reset -q --hard ${GIT_HASH} && ${RM} -r .git) && \
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${FIND} ${PORTNAME}-${DISTVERSIONFULL} -and -exec ${TOUCH} -h -d 1970-01-01T00:00:00Z {} \; && \
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${FIND} ${PORTNAME}-${DISTVERSIONFULL} -print0 | LC_ALL=C ${SORT} -z | \
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${TAR} czf ${PORTNAME}-${DISTVERSIONFULL}${EXTRACT_SUFX} --format=bsdtar --gid 0 --uid 0 --options gzip:!timestamp --no-recursion --null -T - && \
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${RM} -r ${PORTNAME}-${DISTVERSIONFULL}; \
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fi
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.else
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DISTNAME= ${PORTNAME}-${DISTVERSION}-release-public.src-UI
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.endif
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OPTIONS_DEFINE= GSL GUI HDF5
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OPTIONS_DEFAULT= GSL HDF5
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OPTIONS_SUB= yes
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GSL_DESC= GSL support
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GSL_CMAKE_BOOL= DAKOTA_HAVE_GSL HAVE_QUESO HAVE_QUESO_GPMSA # QUESO requires GSL
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GSL_LIB_DEPENDS= libgsl.so:math/gsl
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HDF5_CMAKE_BOOL= DAKOTA_HAVE_HDF5 \
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HAVE_MUQ # MUQ module requires HDF5
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HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \
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libsz.so:science/szip
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GUI_DESC= Build the Dakota/Motif Graphics package
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GUI_CMAKE_BOOL= HAVE_X_GRAPHICS
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GUI_BROKEN= error: non-void function 'SciPlotListReturnPtr' should return a value
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post-extract:
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@${FIND} ${WRKSRC} -name "*.orig" -delete
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@${ECHO} ${DISTVERSION} > ${WRKSRC}/VERSION # expected by the 'install' target
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post-install:
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# remove eigen3 that Dakota installs
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cd ${STAGEDIR}${PREFIX} && ${RM} -r include/eigen3 share/eigen3
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# install libraries that it fails to install
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.for l in libmuqUtilities.so libmuqModeling.so libmuqSamplingAlgorithms.so
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${INSTALL_LIB} ${BUILD_WRKSRC}/packages/external/muq2/lib/${l} ${STAGEDIR}${PREFIX}/lib
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.endfor
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do-test: # from Additional Test Suites @ https://dakota.sandia.gov/content/additional-test-suites (many tests are known to fail)
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## minimal set of fast-running tests that should NOT FAIL (may DIFF, depending on platform / compiler)
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#cd ${WRKSRC}/test && ./dakota_test.perl
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## test suite that should PASS on any supported platform (NO DIFF or FAIL)
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#cd ${WRKSRC}/test && ./dakota_test.perl --label-regex=AcceptanceTest
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## run all Dakota tests active in this build (should PASS or DIFF)
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#cd ${WRKSRC}/test && ./dakota_test.perl --label-regex=dakota_
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# Tests should be this way, but this fails:
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@cd ${BUILD_WRKSRC} && \
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${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DDAKOTA_ENABLE_TESTS:BOOL=ON ${CMAKE_SOURCE_PATH} && \
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \
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(cd ${WRKSRC} && ctest -j 4 -L FastTest -LE Diff)
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.include <bsd.port.mk>
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