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ariadne
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Cleanup $() variables in ports Makefiles.
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2016-07-20 15:33:20 +00:00 |
artemis
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${RM} already has -f.
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2016-10-21 12:51:40 +00:00 |
avida
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biology/avida: Fix ncurses from ports support
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2016-11-19 14:56:46 +00:00 |
babel
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bcftools
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biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
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2016-05-26 20:28:55 +00:00 |
bedtools
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biology/bedtools is not jobs safe
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2016-08-22 04:32:18 +00:00 |
biococoa
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biojava
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- Mark it BROKEN
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2016-10-28 01:49:40 +00:00 |
blat
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biology/blat: Fix build with non-base SSL
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2016-09-30 19:40:13 +00:00 |
bowtie
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bowtie2
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biology/bowtie2: 2.2.7 -> 2.2.8
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2016-05-13 20:12:44 +00:00 |
bwa
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Attempt to fix build on non-x86 archs.
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2016-11-11 09:07:21 +00:00 |
cd-hit
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cdbfasta
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chemeq
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- Add LICENSE
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2016-04-10 11:24:32 +00:00 |
clustalw
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Remove useless WRKSRC definitions.
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2016-05-25 15:43:34 +00:00 |
consed
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- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with
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2016-09-05 19:23:42 +00:00 |
crux
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
diamond
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biology/diamond: Update to version 0.8.26
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2016-11-06 05:42:32 +00:00 |
emboss
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- update libgd to 2.2.2
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2016-07-20 09:33:31 +00:00 |
fasta
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${RM} already has -f.
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2016-10-21 12:51:40 +00:00 |
fasta3
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- Fix trailing whitespace in pkg-messages
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2016-05-19 11:09:14 +00:00 |
fastdnaml
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fastool
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fasttree
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fastx-toolkit
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
fluctuate
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garlic
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gff2ps
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
gmap
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The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.
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2016-11-08 19:29:56 +00:00 |
gperiodic
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- LICENSE
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2016-07-02 09:05:22 +00:00 |
grappa
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
hmmer
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htslib
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Use USES=pathfix where applicable.
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2016-10-21 15:21:13 +00:00 |
iolib
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- Update to 1.14.8
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2016-05-01 01:03:48 +00:00 |
jalview
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
jellyfish
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Mark various leaf ports broken on aarch64, and, where appropriate, other
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2016-11-11 09:31:02 +00:00 |
lagan
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- Fix trailing whitespace in pkg-messages
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2016-05-19 11:09:14 +00:00 |
lamarc
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- Switch to options helpers
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2016-08-18 09:31:58 +00:00 |
libgtextutils
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Use USES=pathfix where applicable.
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2016-10-21 15:21:13 +00:00 |
libsbml
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Cleanup no longer needed CHMOD usage after r424898.
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2016-11-02 22:45:14 +00:00 |
linux-foldingathome
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- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with
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2016-09-05 19:23:42 +00:00 |
mafft
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
mapm3
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
migrate
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- Switch to options helpers
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2016-04-17 10:15:59 +00:00 |
molden
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biology/molden: add missing LICENSE_NAME
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2016-11-10 05:13:02 +00:00 |
mopac
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mrbayes
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mummer
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muscle
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Mark various leaf ports broken on aarch64, and, where appropriate, other
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2016-11-11 09:31:02 +00:00 |
ncbi-blast+
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biology/ncbi-blast+: Remove redundant LIB_DEPENDS (bz2 libary)
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2016-09-11 05:35:42 +00:00 |
ncbi-toolkit
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Cleanup no longer needed CHMOD usage after r424898.
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2016-11-02 22:45:14 +00:00 |
njplot
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biology/njplot: Revive and update to version 2.4
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2016-11-16 14:52:53 +00:00 |
p5-AcePerl
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Mark various leaf ports broken on aarch64, and, where appropriate, other
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2016-11-11 09:31:02 +00:00 |
p5-Bio-ASN1-EntrezGene
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- Update to 1.72
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2016-09-11 05:26:01 +00:00 |
p5-Bio-Das
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
p5-Bio-Das-Lite
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
p5-Bio-GFF3
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
p5-Bio-Glite
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
p5-Bio-Graphics
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
p5-Bio-MAGETAB
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
p5-Bio-NEXUS
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
p5-Bio-Phylo
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
p5-Bio-SCF
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
p5-bioperl
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
p5-bioperl-run
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
p5-transdecoder
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
paml
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Cleanup no longer needed CHMOD usage after r424898.
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2016-11-02 22:45:14 +00:00 |
phrap
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phred
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phylip
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
phyml
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
plink
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
plinkseq
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Mark various leaf ports broken on aarch64, and, where appropriate, other
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2016-11-11 09:31:02 +00:00 |
primer3
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protomol
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
psi88
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
py-biom-format
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Update email address to jrm@FreeBSD.org for ports that I maintain
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2016-09-23 21:42:02 +00:00 |
py-biopython
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- Update to 1.68
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2016-09-23 01:54:45 +00:00 |
pycogent
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- Update to 1.9 [1]
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2016-08-08 11:21:04 +00:00 |
pyfasta
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
python-nexus
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- Update to 1.35
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2016-06-08 07:39:05 +00:00 |
recombine
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When there is a do-install target, do not use a post-install target, do
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2016-07-19 11:04:13 +00:00 |
ruby-bio
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
samtools
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biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
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2016-05-26 20:28:55 +00:00 |
seaview
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biology/seaview: Update version 4.5.4.8=>4.6
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2016-06-10 11:06:42 +00:00 |
seqan
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- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]
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2016-09-14 19:38:58 +00:00 |
seqan1
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When there is a do-install target, do not use a post-install target, do
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2016-07-19 11:04:13 +00:00 |
seqan-apps
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- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]
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2016-09-14 19:38:58 +00:00 |
seqio
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seqtools
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biology/seqtools: update 4.43.0 -> 4.44.1
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2016-11-11 06:19:10 +00:00 |
sim4
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slclust
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Remove unneeded usage of:
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2016-06-06 15:25:42 +00:00 |
ssaha
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
t_coffee
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Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
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2016-04-01 13:29:15 +00:00 |
tinker
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Cleanup no longer needed CHMOD usage after r424898.
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2016-11-02 22:45:14 +00:00 |
treepuzzle
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treeviewx
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GOOGLE_CODE has gone away.
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2016-09-14 15:59:34 +00:00 |
trimmomatic
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Trimmomatic performs a variety of useful trimming tasks for illumina
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2016-03-17 08:21:14 +00:00 |
tRNAscan-SE
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Prevent collision with getline(3)
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2016-05-13 18:38:34 +00:00 |
ugene
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The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.
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2016-11-08 19:29:56 +00:00 |
vcftools
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velvet
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wise
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- Switch to options helpers
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2016-06-21 09:05:06 +00:00 |
xmolwt
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- Fix trailing whitespace in pkg-descrs, categories [a-f]*
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2016-05-19 10:21:23 +00:00 |
Makefile
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biology/njplot: Revive and update to version 2.4
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2016-11-16 14:52:53 +00:00 |