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7e14529975
freebsd-ports/biology
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Rong-En Fan 7e14529975 MAPMAKER/EXP is a linkage analysis package designed to help construct primary 
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
performs full multipoint linkage analysis (simultaneous estimation of all
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only
successor to the original MAPMAKER program.

MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
genes controlling polygenic quantitative traits in F2 intercrosses and BC1
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
can be found in the technical report (included with MAPMAKER/QTL).

WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/

PR:		ports/122452
Submitted by:	Tassilo Philipp <tphilipp at potion-studios.com>
2008-04-06 04:49:05 +00:00
..
adun - cleanup after gnustep-make-2.0.1 2007-07-22 20:50:58 +00:00
ariadne
artemis - Update to version 9 2007-07-08 11:47:58 +00:00
avida [patch] cleanup non-supported FreeBSD versions 2007-05-02 07:13:53 +00:00
babel
belvu - Release distfile was renamed. 2007-03-08 13:17:26 +00:00
biococoa - update for gnustep-make-2.0.0 2007-05-25 05:55:36 +00:00
biojava - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
blast Remove always-false/true conditions based on OSVERSION 500000 2007-10-04 00:15:01 +00:00
blat Fix build on !i386 2008-01-04 15:14:52 +00:00
boinc-simap - Runs on 7.0-CURRENT with compat6x 2007-07-08 11:56:59 +00:00
chemeq Migration from bison 1.x to 2.x 2007-10-17 10:13:01 +00:00
clustalw - Update to 2.0.5 2008-03-19 14:01:13 +00:00
crimap - Fix the build with GCC 4.2 2007-06-18 21:35:50 +00:00
distribfold - Remove unreachable OSVERSION code. 2007-04-16 11:57:17 +00:00
dna-qc Remove always-true condition due to OSVERSION 2007-04-16 11:58:10 +00:00
dotter Umark BROKEN, stale distfile removed from ftp-master. 2008-01-27 11:26:35 +00:00
embassy - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-23 16:44:09 +00:00
emboss - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-23 16:44:09 +00:00
fasta
fasta3 - Update to 35.3.5 2008-03-30 05:07:36 +00:00
fastdnaml
finchtv
fluctuate Fix master site and un-deprecate 2007-01-25 11:01:25 +00:00
garlic - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-24 13:03:55 +00:00
genpak - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
gff2ps Reset chuynh@biolateral.com.au: address bounces. 2007-03-10 20:20:10 +00:00
gmap [patch] cleanup non-supported FreeBSD versions 2007-04-16 21:18:53 +00:00
gperiodic Fix pkg-plist 2007-08-02 20:25:01 +00:00
grappa
hmmer
jalview - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
kinemage - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
L-Breeder - Remove USE_X_PREFIX 2008-03-21 20:00:05 +00:00
lagan
lamarc - Update to 2.1.2b 2007-10-23 23:07:19 +00:00
libgenome Use libtool port instead of included version to avoid objformat a.out botch 2007-02-01 02:42:05 +00:00
linux-foldingathome - Fix typo in WWW 2007-10-04 07:28:40 +00:00
lsysexp - Remove USE_X_PREFIX 2008-03-21 20:00:05 +00:00
mafft - Chase fasta3 update 2008-04-01 22:24:51 +00:00
mapm3 MAPMAKER/EXP is a linkage analysis package designed to help construct primary 2008-04-06 04:49:05 +00:00
migrate - File was rerolled for a small bugfix. 2008-02-27 07:34:21 +00:00
molden Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:33:38 +00:00
mopac
mrbayes MrBayes is a program for the Bayesian estimation of phylogeny. 2007-12-15 15:13:41 +00:00
mummer MUMmer is a modular system for the rapid whole genome alignment of finished 2007-12-14 20:54:47 +00:00
nab - Allow build with AMD64 2007-10-28 21:42:23 +00:00
ncbi-toolkit - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
ortep3 Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-14 09:51:49 +00:00
p5-AcePerl Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-Bio-ASN1-EntrezGene Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-Bio-Das - Update to 1.07 2008-03-12 12:24:10 +00:00
p5-Bio-Phylo Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-bioperl Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-bioperl-devel Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-bioperl-run Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-bioperl-run-devel Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
paml Reset dbader@eece.unm.edu due to maintainer-timeouts. 2007-03-11 03:21:18 +00:00
phylip - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
platon Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:41:22 +00:00
povchem - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
primer3 - Update to 1.1.3 2008-04-04 20:46:35 +00:00
protomol - Fix build with GCC 4.2 2008-03-28 19:01:48 +00:00
psi88 Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:41:22 +00:00
py-biopython - Fix typos. 2007-05-31 03:49:14 +00:00
pymol - Add missing dependens 2008-03-27 11:20:17 +00:00
rasmol - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
recombine Fix master sites, un-deprecate and update biology/recombine to 1.41. 2007-01-25 12:22:50 +00:00
ruby-bio - Update to 1.1.0 2007-10-24 01:38:51 +00:00
seaview - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-23 16:44:09 +00:00
seqio Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
sim4
t_coffee - Update to 5.68 2008-04-05 10:47:11 +00:00
tinker Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:49:37 +00:00
treepuzzle
treeviewx - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
tRNAscan-SE Reset chuynh@biolateral.com.au: address bounces. 2007-03-10 20:20:10 +00:00
wise Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
xdrawchem - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-23 23:03:18 +00:00
xmolwt - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
Makefile MAPMAKER/EXP is a linkage analysis package designed to help construct primary 2008-04-06 04:49:05 +00:00