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Code Issues Releases Activity
845f28fefc
freebsd-ports/biology/hyphy/pkg-plist
Joseph Mingrone dab99da055
biology/hyphy: Update to 2.4.32 
https://github.com/veg/hyphy/releases/tag/2.5.32

Port changes:
- Remove USES=ssl since it's an indirect dependency from curl
- Remove patch that was upstreamed
2021-08-20 10:56:52 -03:00

438 lines
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bin/hyphy
%%DATADIR%%/GeneticCodes/Alt_Yeast_Nuclear.cod
%%DATADIR%%/GeneticCodes/Ascidian_mtDNA.cod
%%DATADIR%%/GeneticCodes/Blepharisma_Nuclear.cod
%%DATADIR%%/GeneticCodes/Ciliate.cod
%%DATADIR%%/GeneticCodes/Echinoderm_mtDNA.cod
%%DATADIR%%/GeneticCodes/Euplotid_Nuclear.cod
%%DATADIR%%/GeneticCodes/Flatworm_mtDNA.cod
%%DATADIR%%/GeneticCodes/Invertebrate_mtDNA.cod
%%DATADIR%%/GeneticCodes/Mold_mtDNA.cod
%%DATADIR%%/GeneticCodes/Thraustochytrium_mtDNA.cod
%%DATADIR%%/GeneticCodes/Vertebratemtdna.cod
%%DATADIR%%/GeneticCodes/Yeast_mtDNA.cod
%%DATADIR%%/SubstitutionClasses/AAEFV/Equal
%%DATADIR%%/SubstitutionClasses/AAEFV/Estimated
%%DATADIR%%/SubstitutionClasses/AAEFV/Observed In Data Set
%%DATADIR%%/SubstitutionClasses/AAEFV/Observed In Partition
%%DATADIR%%/SubstitutionClasses/CodonEFV/Equal
%%DATADIR%%/SubstitutionClasses/CodonEFV/Observed Codon
%%DATADIR%%/SubstitutionClasses/CodonEFV/Observed Nuc 3 params.
%%DATADIR%%/SubstitutionClasses/CodonEFV/Observed Nuc 9 params.
%%DATADIR%%/SubstitutionClasses/Heterogeneity/2 Bin Discrete
%%DATADIR%%/SubstitutionClasses/Heterogeneity/Beta
%%DATADIR%%/SubstitutionClasses/Heterogeneity/Beta-Gamma
%%DATADIR%%/SubstitutionClasses/Heterogeneity/General Discrete
%%DATADIR%%/SubstitutionClasses/Heterogeneity/Half Normal
%%DATADIR%%/SubstitutionClasses/Heterogeneity/Lognormal
%%DATADIR%%/SubstitutionClasses/NucEFV/Equal
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