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34 lines
1.3 KiB
Plaintext
34 lines
1.3 KiB
Plaintext
--- Makefile.orig 2013-10-18 01:03:39.000000000 +0900
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+++ Makefile 2014-06-17 21:34:34.000000000 +0900
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@@ -1,15 +1,15 @@
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-CC = gcc
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-CFLAGS = -Wall
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+CC ?= gcc
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+CFLAGS += -Wall
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DEBUG = -g
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LIBS = -lm
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-OPT = -O3
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-MAXKMERLENGTH=31
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-CATEGORIES=2
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+#OPT = -O3
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+MAXKMERLENGTH?=31
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+CATEGORIES?=2
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DEF = -D MAXKMERLENGTH=$(MAXKMERLENGTH) -D CATEGORIES=$(CATEGORIES)
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PDFLATEX_VERSION := $(shell pdflatex --version 2> /dev/null)
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# Mac OS users: uncomment the following lines
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-CFLAGS = -Wall -m64
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+#CFLAGS = -Wall -m64
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# Sparc/Solaris users: uncomment the following line
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# CFLAGS = -Wall -m64
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@@ -40,7 +40,7 @@
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OBJ = obj/tightString.o obj/run.o obj/splay.o obj/splayTable.o obj/graph.o obj/run2.o obj/fibHeap.o obj/fib.o obj/concatenatedGraph.o obj/passageMarker.o obj/graphStats.o obj/correctedGraph.o obj/dfib.o obj/dfibHeap.o obj/recycleBin.o obj/readSet.o obj/binarySequences.o obj/shortReadPairs.o obj/locallyCorrectedGraph.o obj/graphReConstruction.o obj/roadMap.o obj/preGraph.o obj/preGraphConstruction.o obj/concatenatedPreGraph.o obj/readCoherentGraph.o obj/utility.o obj/kmer.o obj/scaffold.o obj/kmerOccurenceTable.o obj/allocArray.o obj/autoOpen.o
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OBJDBG = $(subst obj,obj/dbg,$(OBJ))
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-default : cleanobj zlib obj velveth velvetg doc
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+default : cleanobj zlib obj velveth velvetg
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clean : clean-zlib
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-rm obj/*.o obj/dbg/*.o ./velvet*
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