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freebsd-ports/science
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Matthias Andree 515db2ed10 Upgrade OpenEXR and ilmbase to 2.2.0. 
GCC 4.2 in FreeBSD 8.X/9.X base is now too old to compile OpenEXR, so
GCC-based systems will upgrade to the default ports compiler (GCC 4.7
currently.)

Add two patches to OpenEXR to permit building it in a live system with
the older OpenEXR version installed. Bug report filed to upstream Github
at https://github.com/openexr/openexr/issues/130

Couple OpenEXR more tightly to ilmbase and require its exact .so
version.

Add UPDATING note, and bump PORTREVISION of all dependent ports.

Proto-STAGE hugin-devel, and mark it IGNORE because hugin is newer.

Approved by:	portmgr (implicit for bumping PORTREVISION on unstaged ports)
2014-08-15 20:37:31 +00:00
..
2d-rewriter - Update to 1.5 2014-06-05 19:36:14 +00:00
2dhf Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
abinit Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
afni Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS. 2014-07-15 16:51:34 +00:00
avogadro Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
bddsolve
bft Add USES=libtool and INSTALL_TARGET=install-strip 2014-07-08 15:24:14 +00:00
bodr Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
brian - Added STAGE support 2014-05-31 04:56:47 +00:00
buddy Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
cdcl - Update to 5.4.8 2014-05-22 15:46:16 +00:00
cdf Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
cdo - Update to 1.6.4 2014-07-04 02:49:34 +00:00
cgnslib - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
cgribex - Add cgribex 1.6.3 2014-04-29 13:28:31 +00:00
checkmol Stagify. 2014-06-10 12:52:48 +00:00
chemical-mime-data Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
chemtool Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
chemtool-devel Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
clhep science/clhep: Upgrade version 2.1.0.1 => 2.2.0.1 and stage 2014-07-31 18:08:53 +00:00
colt Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
crf++ - Convert to USES=libtool 2014-07-08 15:18:44 +00:00
dcl Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
devisor Stagify. 2014-06-10 14:43:35 +00:00
dlpoly-classic - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
dtiquery Modernize LIB_DEPENDS 2014-07-14 18:42:04 +00:00
ecs Fix build with texlive 2014-07-21 21:57:18 +00:00
elmer-eio Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
elmer-hutiter Modernize LIB_DEPENDS 2014-07-14 18:42:04 +00:00
elmer-matc Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
elmer-meshgen2d Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
elmergrid Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
elmerpost Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
epte
fastcap Repair instances, almost all courtesy of bf ;-), of spaces 2014-07-29 20:55:27 +00:00
fasthenry Repair instances, almost all courtesy of bf ;-), of spaces 2014-07-29 20:55:27 +00:00
fisicalab Bump PORTREVISION on more ports that depend on libgcrypt after the update 2014-08-05 22:13:29 +00:00
fvcom science/fvcom: fix for LEGAL and correct install for mpi version 2014-07-27 19:14:43 +00:00
fvcom-mpi science/fvcom-mpi: change prefix 2014-07-27 19:18:00 +00:00
fvm - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
g3data Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
gamess Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
gchemutils When linking a library libA with a library libB using libtool, if libB.la 2014-04-23 13:25:16 +00:00
getdp Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
ghemical - Stagify 2014-08-06 16:05:23 +00:00
ghmm - Convert to USES=libtool 2014-07-08 14:50:22 +00:00
gnudatalanguage - Switch graphics/GraphicsMagick to USES=libtool, drop .la files 2014-08-04 19:34:31 +00:00
gramps - Update to version 3.4.8 (Latest Gtk2 version) 2014-07-27 14:05:33 +00:00
gromacs science/gromacs: Upgrade version 4.6.5 => 5.0 2014-08-10 00:03:09 +00:00
gsmc
gtamsanalyzer Bump PORTREVISION on more ports that depend on libgcrypt after the update 2014-08-05 22:13:29 +00:00
gwyddion Upgrade OpenEXR and ilmbase to 2.2.0. 2014-08-15 20:37:31 +00:00
h5utils Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
harminv - Support staging 2014-05-09 18:27:29 +00:00
hdf - USES=libtool tar:bzip2 2014-07-08 14:49:02 +00:00
hdf5 - Mark MAKE_JOBS_UNSAFE 2014-05-24 06:50:24 +00:00
hdf-java Convert GMAKE to MAKE_CMD 2014-06-25 05:35:31 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.8.3 2014-08-10 22:34:50 +00:00
InsightToolkit
isaac-cfd
jmol
jstrack Mark BROKEN: Checksum and size mismatch 2014-08-01 17:26:45 +00:00
kalzium Upgrade OpenEXR and ilmbase to 2.2.0. 2014-08-15 20:37:31 +00:00
kst2 - Update to 3.360 2014-05-04 15:37:11 +00:00
lamprop science/lamprop: Upgrade version 1.3.3 => 1.5.0 and stage 2014-08-05 07:31:33 +00:00
libctl Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
libghemical - Switch to USES=libtool, drop .la files 2014-08-06 16:06:22 +00:00
libint - Stagify 2014-08-06 16:06:55 +00:00
libkml - Add SWIG option 2014-05-25 18:47:55 +00:00
liblinear Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
liboglappth - Add USES=libtool and INSTALL_TARGET=install-strip 2014-07-08 13:54:24 +00:00
libquantum Convert to USES=libtool 2014-07-08 13:34:32 +00:00
libsvm Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
libsvm-python - Update to 3.18 2014-05-30 13:47:15 +00:00
linsmith - maintain by hamradio as we have gsmc another smith charting program 2014-06-29 11:55:30 +00:00
massxpert - Support staging. 2014-06-30 20:38:59 +00:00
mbdyn Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
mcstas Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
medit Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
meep - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
mei - Add USES=libtool 2014-07-07 21:57:42 +00:00
metaf2xml Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
minc Mark BROKEN: Fails to build 2014-05-18 15:42:09 +00:00
minc2 science/minc2: Unbreak, Upgrade version 2.0.18 => 2.2.00 and stage 2014-07-29 21:33:51 +00:00
mol2ps Stagify. 2014-06-10 14:46:36 +00:00
mpb Mark BROKEN: Fails to build 2014-05-18 15:40:13 +00:00
mpqc - Bump PORTREVISION to force rebuild of .la file 2014-08-06 23:57:20 +00:00
mpqc-mpich
ncs - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
netcdf Fix packaging with default options (without DOXYGEN) 2014-05-03 11:43:26 +00:00
netcdf-cxx - Use USE_GITHUB 2014-08-15 17:27:48 +00:00
netcdf-fortran Allow to build with texinfo from ports 2014-06-26 08:41:34 +00:00
nifticlib
openbabel
openkim Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
p5-Algorithm-SVMLight Modernize LIB_DEPENDS 2014-07-14 18:42:04 +00:00
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB - Pass maintainership to perl@ 2014-05-22 15:02:27 +00:00
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.27 2014-06-25 12:14:23 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol
p5-Physics-Unit
paje Bump PORTREVISION on more ports that depend on libgcrypt after the update 2014-08-05 22:13:29 +00:00
paraview Bump PORTREVISION for jbigkit library version bump. 2014-06-22 16:46:17 +00:00
pnetcdf - Convert net/openmpi to USES=libtool and bump dependent ports 2014-07-14 16:51:44 +00:00
psi3 Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
psychopy - Enable stagedir support 2014-06-22 10:55:50 +00:00
pulseview science/pulseview: Remove unnecessary RUN_DEPENDS 2014-08-03 16:16:21 +00:00
py-coards
py-DendroPy - Support staging 2014-06-01 21:30:40 +00:00
py-h5py science/py-h5py: Upgrade to 2.3.0 2014-06-09 05:07:54 +00:00
py-hcluster science/py-hcluster: support stage 2014-06-26 14:27:46 +00:00
py-mdp Convert all :U to :tu and :L to :tl 2014-05-05 09:45:36 +00:00
py-mlpy - Added STAGE support 2014-05-31 13:56:17 +00:00
py-netCDF4 - Pass maintainership to submitter 2014-06-07 18:15:43 +00:00
py-obspy - Remove easy_install dependency 2014-06-15 08:23:19 +00:00
py-paida science/py-paida: support stage 2014-08-05 13:22:35 +00:00
py-pupynere
py-pyaixi
py-pydap science/py-pydap: remove useless python knobs 2014-06-20 01:48:34 +00:00
py-pydicom - Added STAGE support 2014-05-31 13:51:28 +00:00
py-scikit-learn Update to versiob 0.15.0 2014-07-16 11:53:12 +00:00
py-scimath - Add STAGE support 2014-05-31 13:54:24 +00:00
py-scipy Fix packaging with pkg-install 2014-06-17 19:39:23 +00:00
py-ws2300 - Update to 1.9 2014-05-29 05:11:17 +00:00
pybrain - Update to 0.3.2 2014-05-31 13:59:02 +00:00
pycdf science/pycdf: support stage and use auto plist 2014-08-05 13:27:44 +00:00
pynn remove NO_STAGE. 2014-06-10 14:48:43 +00:00
pyteomics
pyteomics.biolccc
qcl - Update to 0.6.4 2014-05-17 10:53:20 +00:00
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-snow
R-cran-som
ruby-dcl Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
ruby-gphys Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
ruby-netcdf Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
rubygem-ai4r
rubygem-netcdf - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
sigrok-cli science/sigrok-cli: update to 0.5.0 2014-07-28 23:06:29 +00:00
sigrok-firmware Add new port: science/sigrok-firmware 2014-08-03 22:37:51 +00:00
sigrok-firmware-fx2lafw Add new port: science/sigrok-firmware-fx2lafw 2014-08-03 22:24:50 +00:00
sigrok-firmware-utils Add new port: science/sigrok-firmware-utils 2014-08-03 22:09:07 +00:00
silo - Add USES=libtool 2014-07-07 21:56:17 +00:00
simlib Stagify. 2014-06-10 15:07:59 +00:00
simsmith Java based Smith chart program. Performs single-frequency and sweep charting 2014-07-03 21:02:10 +00:00
step Upgrade OpenEXR and ilmbase to 2.2.0. 2014-08-15 20:37:31 +00:00
svmlight In some straightforward cases, protect documentation behind 2014-08-04 03:40:14 +00:00
szip - Add my LOCAL to MASTER_SITES 2014-04-29 13:28:25 +00:00
udunits - Revert r362761 2014-07-25 07:35:24 +00:00
v_sim - Add USES=libtool 2014-07-07 21:35:34 +00:00
veusz
vmd Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
voro++
x11iraf Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
xfce4-equake-plugin - Fix checksum 2014-04-27 15:10:34 +00:00
xmakemol Stagify. 2014-06-10 15:13:44 +00:00
xmds Reset maintainership for ports not staged with no pending PR 2014-07-24 16:33:10 +00:00
Makefile Add new port: science/sigrok-firmware 2014-08-03 22:37:51 +00:00