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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-17 03:25:46 +00:00
freebsd-ports/biology
2012-05-16 13:46:30 +00:00
..
adun - fix build with gcc46 2012-02-07 05:36:27 +00:00
ariadne
artemis Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 2011-07-21 05:03:02 +00:00
avida Change maintainer address to my FreeBSD address 2011-09-15 12:33:27 +00:00
babel
belvu
biococoa
biojava
blast
blat
boinc-simap - Adjust BOINC_* variables to be consistent with new system in boinc-client 2012-05-16 13:46:30 +00:00
chemeq Remove WWW entries from unmaintained ports that return 404 or where the domain 2011-08-02 20:58:23 +00:00
clustalw Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since 2011-08-11 19:20:17 +00:00
consed
crux Does not build on powerpc-9: error in pthreads. 2011-11-10 14:30:51 +00:00
dna-qc
dotter
embassy - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
emboss - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
fasta
fasta3 - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
fastdnaml - Fix MASTER_SITES and WWW: line 2011-08-26 00:24:48 +00:00
finchtv
fluctuate
garlic Update to 1.6. Web site has been moved. 2011-05-11 05:55:27 +00:00
genpak
gff2ps - Update MASTER_SITES and WWW: line 2012-02-19 23:24:52 +00:00
gmap
gperiodic
grappa
hmmer
iolib - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
jalview Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 2011-07-21 05:03:02 +00:00
lagan
lamarc - The proper acronym for Apache Software License 2 is really AL2 2012-01-09 15:41:08 +00:00
libgenome
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
mopac - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
mrbayes
mummer - Update to 3.23 2012-01-17 00:51:39 +00:00
muscle
ncbi-toolkit - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
njplot
ortep3
p5-AcePerl - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
p5-Bio-ASN1-EntrezGene - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
p5-Bio-Das - Revert ports/165605 as requested by portmgr@ 2012-03-13 16:15:36 +00:00
p5-Bio-Das-Lite - Fix missing DEPENDS to silence build warnings 2011-09-24 20:45:23 +00:00
p5-Bio-GFF3 - Update to 1.3 2012-04-26 10:37:09 +00:00
p5-Bio-Glite At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-Bio-Graphics - Update to 2.28 2012-04-17 13:02:59 +00:00
p5-Bio-MAGETAB - Update to 1.22 2012-02-09 03:28:51 +00:00
p5-Bio-NEXUS - Update to 0.78 2012-02-11 02:04:41 +00:00
p5-Bio-Phylo - Update to 0.48 2012-05-03 09:48:21 +00:00
p5-Bio-SCF At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-bioperl At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-bioperl-run At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
paml
phd2fasta
phrap
phred
phylip
phyml
platon The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
povchem Switch dependency on povray to povray-meta port. 2011-06-20 22:32:03 +00:00
primer3 - Respect CC 2012-01-27 17:41:00 +00:00
protomol - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
psi88
py-biopython - Update to 1.59 2012-03-06 06:40:50 +00:00
pycogent - Update to 1.5.1 2011-08-11 11:37:18 +00:00
pyfasta - Update to 0.4.5 2012-02-23 13:43:25 +00:00
pymol update to 1.5.0.1. 2012-02-16 02:30:10 +00:00
python-nexus - Update to 0.87 2011-12-23 08:05:00 +00:00
rasmol
recombine
ruby-bio
seaview Chase pdflib.so version and bump PORTREVISION accordingly. 2012-01-10 11:41:37 +00:00
seqio
sim4
ssaha
t_coffee - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
tinker - ${FFLAGS} might contain commas 2011-10-10 20:17:22 +00:00
treepuzzle
treeviewx - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
tRNAscan-SE
velvet Update to 1.1.04 2011-06-09 16:33:21 +00:00
wise
xdrawchem - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
xmolwt The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
Makefile Bye bye abandonwares (part 2) 2011-08-01 04:29:44 +00:00