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freebsd-ports/biology
History
Bryan Drewery 52c6ac3e26 - Disconnect ports removed in r325546
2013-08-29 02:28:57 +00:00
..
ariadne
…
artemis
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avida
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
babel
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 19:01:47 +00:00
biococoa
Update to latest GNUstep core libraries.
2013-08-28 18:26:01 +00:00
biojava
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blast
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blat
. remove pkg-plist (along with the previous commit).
2013-06-19 18:44:32 +00:00
boinc-simap
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chemeq
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 20:01:30 +00:00
clustalw
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consed
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crux
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dotter
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embassy
Convert from USE_MOTIF to USES=motif
2013-07-09 21:49:35 +00:00
emboss
- update libdg to 2.1.0
2013-08-09 14:05:52 +00:00
fasta
Fix some PORT_OPTIONS conversions
2013-06-30 20:53:06 +00:00
fasta3
- Update to 36.3.6
2013-07-19 14:08:02 +00:00
fastdnaml
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finchtv
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fluctuate
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garlic
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genpak
- update libdg to 2.1.0
2013-08-09 14:05:52 +00:00
gff2ps
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 18:56:37 +00:00
gmap
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gperiodic
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 19:05:47 +00:00
grappa
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hmmer
- Convert to new perl framework
2013-08-03 08:45:51 +00:00
iolib
- Update to 7.31.0
2013-07-11 16:26:26 +00:00
jalview
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lagan
- Convert to new perl framework
2013-08-03 13:44:00 +00:00
lamarc
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
libgenome
biology/libgenome: Mark jobs unsafe
2013-08-14 09:53:39 +00:00
libsbml
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linux-foldingathome
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mafft
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mapm3
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migrate
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molden
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mopac
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
mrbayes
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mummer
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muscle
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ncbi-toolkit
Convert from USE_MOTIF to USES=motif
2013-07-09 21:49:35 +00:00
njplot
Convert from USE_MOTIF to USES=motif
2013-07-10 07:33:24 +00:00
ortep3
. introdice optionsNG to the port;
2013-06-19 20:06:59 +00:00
p5-AcePerl
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Bio-ASN1-EntrezGene
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p5-Bio-Das
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Bio-Das-Lite
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Bio-GFF3
- Pet portlint: remove blank line among *_DEPENDS
2013-08-06 13:03:54 +00:00
p5-Bio-Glite
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Bio-Graphics
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Bio-MAGETAB
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Bio-NEXUS
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Bio-Phylo
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Bio-SCF
- Convert to new perl framework
2013-08-06 08:50:49 +00:00
p5-bioperl
- Convert to new perl framework
2013-08-06 08:50:49 +00:00
p5-bioperl-run
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paml
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phd2fasta
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phrap
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phred
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phylip
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
phyml
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
platon
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plink
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plinkseq
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povchem
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primer3
Make sure to respect CC and CXX, this fixes the build on head without gcc
2013-08-28 06:04:51 +00:00
protomol
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psi88
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 19:54:13 +00:00
py-biopython
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pycogent
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pyfasta
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pymol
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python-nexus
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rasmol
Convert to USES=imake
2013-06-28 18:32:25 +00:00
recombine
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 19:15:14 +00:00
ruby-bio
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seaview
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
seqan
Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.
2013-08-17 16:27:24 +00:00
seqio
Remove stale (since r321246) pkg-plist file.
2013-06-19 21:04:36 +00:00
sim4
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ssaha
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t_coffee
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
tinker
biology/tinker: Regenerate distinfo to unbreak fetch
2013-08-18 11:38:34 +00:00
treepuzzle
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treeviewx
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tRNAscan-SE
- Convert to new perl framework
2013-08-03 08:45:51 +00:00
ugene
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
velvet
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wise
- Convert to new perl framework
2013-08-03 13:44:00 +00:00
xmolwt
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
Makefile
- Disconnect ports removed in r325546
2013-08-29 02:28:57 +00:00