Rong-En Fan 4f1966845c - Use the correct MASTER_SITE_SUBDIR, make it fetchable ... PR: 99757 Submitted by: Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw> Approved by: delphij (mentor, implicit)		2006-07-04 03:43:16 +00:00
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ariadne	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
artemis	- Fix fetch problems	2005-12-05 16:57:26 +00:00
avida	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
babel	- Add SHA256	2005-11-24 00:04:00 +00:00
belvu	Add belvu 2.29, a viewer for multiple sequence alignments.	2006-03-15 10:24:57 +00:00
biojava	BROKEN: Does not compile	2006-04-22 22:10:17 +00:00
blast	- Update PORTREVISION to match latest release (see main web site)	2006-06-11 09:13:43 +00:00
blat	Add blat 33, a fast tool for local sequence similarity searches.	2006-03-15 10:26:12 +00:00
boinc-simap	- Provide SSE optimized application as an option	2006-06-24 21:04:45 +00:00
chemeq	- Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoid	2006-01-19 19:47:59 +00:00
clustalw	SHA256ify	2006-01-22 08:34:46 +00:00
coalesce	- Add SHA256	2005-11-24 00:04:00 +00:00
crimap	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
distribfold	USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more than	2006-06-11 15:29:01 +00:00
dna-qc	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
dotter	Add dotter 20021204 # last modified date in FTP server, a viewer for	2006-03-15 10:35:24 +00:00
embassy	For EMBOSS:	2006-03-31 09:43:21 +00:00
emboss	For EMBOSS:	2006-03-31 09:43:21 +00:00
fasta	Update to 21.u1.d1 (fixes fetch).	2006-05-07 13:04:20 +00:00
fasta3	- Update to 34.t25.d9	2006-06-09 19:18:08 +00:00
fastdnaml	- Add SHA256	2005-11-24 00:04:00 +00:00
finchtv	SHA256ify	2006-01-22 08:34:46 +00:00
fluctuate	- Add SHA256	2005-11-24 00:04:00 +00:00
garlic	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
genpak	- Add SHA256	2005-11-24 00:04:00 +00:00
gff2ps	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
gperiodic	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
grappa	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
hmmer	SHA256ify	2006-01-22 08:34:46 +00:00
jalview	Jalview is a multiple alignment editor written in Java. It is used widely in a	2006-02-13 09:42:13 +00:00
kinemage	Reset jeremy@external.org who has not responded to email asking about	2006-04-05 05:46:33 +00:00
L-Breeder	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
lagan	Add lagan 1.2, efficient tools for large-scale multiple alignments of	2006-03-16 22:31:26 +00:00
lamarc
libgenome	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
lsysexp	- Add MASTER_SITE	2006-06-06 10:07:55 +00:00
mafft	- Update to 5.743	2006-03-19 12:59:16 +00:00
migrate	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
molden	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
mopac	- Use the correct MASTER_SITE_SUBDIR, make it fetchable	2006-07-04 03:43:16 +00:00
nab	SHA256ify	2006-01-22 08:34:46 +00:00
ncbi-toolkit	Update biology/ncbi-toolkit to the latest release.	2006-06-06 12:05:19 +00:00
ortep3	Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about	2006-04-05 06:13:46 +00:00
p5-AcePerl	- Update to 1.89	2006-05-02 23:16:02 +00:00
p5-Bio-ASN1-EntrezGene	SHA256ify	2006-01-22 08:34:46 +00:00
p5-Bio-Das	SHA256ify	2006-01-22 08:34:46 +00:00
p5-Bio-Phylo	- Updated from 0.07 to 0.12	2006-05-19 23:18:32 +00:00
p5-bioperl	SHA256ify	2006-01-22 08:34:46 +00:00
p5-bioperl-devel	Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry	2006-01-22 01:29:46 +00:00
p5-bioperl-run	Bioperl-run contain modules that provides a PERL interface to various	2006-05-02 21:30:08 +00:00
p5-bioperl-run-devel	Bioperl-run contain modules that provides a PERL interface to various	2006-05-02 21:31:43 +00:00
paml	- Update to 3.15	2006-05-20 18:52:19 +00:00
phylip	Put PORTEPOCH back.	2006-02-09 01:17:59 +00:00
platon	- Satisfy portlint	2006-05-06 21:20:59 +00:00
povchem	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
primer3	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
protomol	Add protomol 2.0.3, OO, component based, framework for molecular	2006-05-05 20:09:54 +00:00
psi88	Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about	2006-04-05 06:13:46 +00:00
py-biopython	Update to 1.41	2005-11-11 01:15:35 +00:00
pymol	o Update to 0.99rc1	2006-07-01 05:06:21 +00:00
rasmol	- Add SHA256	2005-11-24 00:04:00 +00:00
recombine	- Add SHA256	2005-11-24 00:04:00 +00:00
ruby-bio	- Update to 1.0.0	2006-04-25 22:09:29 +00:00
seaview	- Update to 2006.02.13	2006-04-05 01:58:03 +00:00
seqio	SHA256ify	2006-01-22 08:34:46 +00:00
sim4	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
t_coffee	Update to 3.27.	2006-02-10 09:45:28 +00:00
tinker	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
treepuzzle	SHA256ify	2006-01-22 08:34:46 +00:00
treeviewx	Update to 0.5.1	2005-12-06 02:00:55 +00:00
tRNAscan-SE	SHA256ify	2006-01-22 08:34:46 +00:00
wise	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
xdrawchem	Mark as BROKEN on sparc64 due to internal compiler error.	2006-07-03 22:22:09 +00:00
xmolwt	Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about	2006-04-05 06:13:46 +00:00
Makefile	SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated	2006-06-19 20:32:08 +00:00