mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2025-02-04 11:23:46 +00:00
Code Issues Releases Activity
freebsd-ports/biology
History
Baptiste Daroussin 5da0c9a774 Support stage 
Conver USE_GMAKE
2014-01-20 17:02:11 +00:00
..
ariadne
Stage support
2013-11-12 21:54:36 +00:00
artemis
…
avida
- Fix build with clang
2013-11-27 16:07:51 +00:00
babel
Support stage
2014-01-15 22:44:13 +00:00
biococoa
…
biojava
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
blast
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
blat
Add stage support
2013-11-12 22:02:02 +00:00
boinc-simap
The hmmer binary was renamed upstream to indicate that it is now an
2013-12-29 10:41:50 +00:00
chemeq
Stage support
2014-01-18 15:55:42 +00:00
clustalw
- Fix build with clang/libc++.
2013-12-20 15:29:07 +00:00
consed
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
crux
Python cleanup:
2014-01-13 21:00:02 +00:00
embassy
Reduce over inclusion of bsd.port.mk
2014-01-15 22:48:32 +00:00
emboss
In preparation for making libtool generate libraries with a sane name, fix all
2013-12-11 14:43:51 +00:00
fasta
Reduce over inclusion of bsd.port.mk
2014-01-15 22:50:18 +00:00
fasta3
Mark as broken: Invalid checksum, seems like the software was rerolled
2014-01-03 19:46:05 +00:00
fastdnaml
…
finchtv
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
fluctuate
…
garlic
…
genpak
Respect PORT_OPTIONS:MDOCS
2013-12-09 01:28:41 +00:00
gff2ps
…
gmap
Support stage
2013-12-10 17:21:46 +00:00
gperiodic
…
grappa
- Respect CC/CFLAGS
2013-12-20 13:27:13 +00:00
hmmer
Stage support
2013-12-30 18:08:14 +00:00
iolib
Support stage
2014-01-20 17:02:11 +00:00
jalview
…
lagan
- Fix build
2013-11-27 13:16:47 +00:00
lamarc
- rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk
2013-12-30 20:55:18 +00:00
libgenome
…
libsbml
Reduce over inclusion of bsd.port.mk
2014-01-15 22:50:50 +00:00
linux-foldingathome
…
mafft
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
mapm3
- Fix build with clang
2014-01-12 19:07:28 +00:00
migrate
…
molden
- USES=fortran gmake.
2013-12-29 14:30:20 +00:00
mopac
In preparation for making libtool generate libraries with a sane name, fix all
2013-12-11 14:43:51 +00:00
mrbayes
Support stage
2013-12-10 17:54:12 +00:00
mummer
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
muscle
…
ncbi-toolkit
…
njplot
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
ortep3
USES=fortran, fix LDFLAGS, staging.
2013-12-17 21:24:17 +00:00
p5-AcePerl
…
p5-Bio-ASN1-EntrezGene
- add stage support
2014-01-06 09:57:19 +00:00
p5-Bio-Das
- support stage
2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite
…
p5-Bio-GFF3
…
p5-Bio-Glite
- support stage
2014-01-05 12:07:20 +00:00
p5-Bio-Graphics
…
p5-Bio-MAGETAB
- Update to 1.28
2013-11-28 15:05:08 +00:00
p5-Bio-NEXUS
…
p5-Bio-Phylo
- support stage
2014-01-05 12:07:20 +00:00
p5-Bio-SCF
- add stage support
2014-01-06 09:44:19 +00:00
p5-bioperl
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
p5-bioperl-run
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
paml
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
phd2fasta
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
phrap
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
phred
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
phylip
…
phyml
…
platon
Version 2013.12.12, USES=fortran, staging.
2013-12-17 21:55:24 +00:00
plink
Fix the build with more standards-compliant compilers such as GCC 4.7. [1]
2013-12-13 09:34:40 +00:00
plinkseq
In preparation for making libtool generate libraries with a sane name, fix all
2013-12-11 14:43:51 +00:00
povchem
Convert to USES=dos2unix
2013-11-18 13:45:44 +00:00
primer3
…
protomol
Reduce over inclusion of bsd.port.mk
2014-01-15 22:51:26 +00:00
psi88
USES=fortran, staging, miscellaneous cleanups.
2013-12-18 16:23:08 +00:00
py-biopython
Python cleanup:
2014-01-13 21:00:02 +00:00
pycogent
…
pyfasta
Python cleanup:
2014-01-13 21:00:02 +00:00
pymol
In preparation for making libtool generate libraries with a sane name, fix all
2013-12-11 14:43:51 +00:00
python-nexus
…
rasmol
…
recombine
…
ruby-bio
Reduce over inclusion of bsd.port.mk
2014-01-15 22:52:28 +00:00
seaview
In preparation for making libtool generate libraries with a sane name, fix all
2013-12-11 14:43:51 +00:00
seqan
…
seqio
…
seqtools
biology/seqtools: update to 4.24
2013-12-24 17:23:23 +00:00
sim4
…
ssaha
…
t_coffee
USES=fortran, staging.
2013-12-18 17:24:51 +00:00
tinker
- biology/tinker: USES=fortran, staging.
2013-12-18 18:27:04 +00:00
treepuzzle
…
treeviewx
Stage support
2013-12-30 18:27:32 +00:00
tRNAscan-SE
…
ugene
- Update to version 1.13.0 and improve FreeBSD support; it also builds
2014-01-16 17:17:15 +00:00
velvet
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
wise
…
xmolwt
…
Makefile
biology/seqtools: Tools for visualising sequence alignments
2013-11-10 11:01:02 +00:00