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freebsd-ports/biology
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Martin Wilke 3e4ed01146 - Remove unneeded dependency from gtk12/gtk20 [1] 
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
	Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
	ehaupt, nox, itetcu, flz, pav

PR:		116263
Tested on:	pointyhat
Approved by:	portmgr (pav)
2008-04-19 17:56:05 +00:00
..
adun Change maintainers e-mail address. 2008-04-10 16:11:24 +00:00
ariadne
artemis - Update to version 9 2007-07-08 11:47:58 +00:00
avida [patch] cleanup non-supported FreeBSD versions 2007-05-02 07:13:53 +00:00
babel
belvu - Release distfile was renamed. 2007-03-08 13:17:26 +00:00
biococoa - update for gnustep-make-2.0.0 2007-05-25 05:55:36 +00:00
biojava - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
blast Remove always-false/true conditions based on OSVERSION 500000 2007-10-04 00:15:01 +00:00
blat Fix build on !i386 2008-01-04 15:14:52 +00:00
boinc-simap implement @dirrmtry macro for the pkg-plist 2008-04-19 00:24:21 +00:00
chemeq Migration from bison 1.x to 2.x 2007-10-17 10:13:01 +00:00
clustalw - Update to 2.0.5 2008-03-19 14:01:13 +00:00
crimap - Fix the build with GCC 4.2 2007-06-18 21:35:50 +00:00
distribfold - Remove unreachable OSVERSION code. 2007-04-16 11:57:17 +00:00
dna-qc Remove always-true condition due to OSVERSION 2007-04-16 11:58:10 +00:00
dotter Umark BROKEN, stale distfile removed from ftp-master. 2008-01-27 11:26:35 +00:00
embassy - Update to 5.0.0 2008-04-13 07:22:42 +00:00
emboss - Replace SF with second working master site 2008-04-17 17:06:48 +00:00
fasta - Update mastersite. 2008-04-18 15:36:54 +00:00
fasta3 - Update to 35.3.6 2008-04-10 08:09:10 +00:00
fastdnaml
finchtv
fluctuate Fix master site and un-deprecate 2007-01-25 11:01:25 +00:00
garlic - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
genpak - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
gff2ps Reset chuynh@biolateral.com.au: address bounces. 2007-03-10 20:20:10 +00:00
gmap [patch] cleanup non-supported FreeBSD versions 2007-04-16 21:18:53 +00:00
gperiodic - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
grappa Reset dbader@ece.unm.edu due to timeouts and no response to email. 2006-12-13 13:20:20 +00:00
hmmer
jalview - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
kinemage - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
L-Breeder - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
lagan
lamarc - Update to 2.1.2b 2007-10-23 23:07:19 +00:00
libgenome Use libtool port instead of included version to avoid objformat a.out botch 2007-02-01 02:42:05 +00:00
linux-foldingathome - Fix typo in WWW 2007-10-04 07:28:40 +00:00
lsysexp - Remove USE_X_PREFIX 2008-03-21 20:00:05 +00:00
mafft - Chase fasta3 update 2008-04-01 22:24:51 +00:00
mapm3 MAPMAKER/EXP is a linkage analysis package designed to help construct primary 2008-04-06 04:49:05 +00:00
migrate - File was rerolled for a small bugfix. 2008-02-27 07:34:21 +00:00
molden - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
mopac
mrbayes MrBayes is a program for the Bayesian estimation of phylogeny. 2007-12-15 15:13:41 +00:00
mummer MUMmer is a modular system for the rapid whole genome alignment of finished 2007-12-14 20:54:47 +00:00
nab - Update maintainer's email 2008-04-06 08:39:20 +00:00
ncbi-toolkit - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
ortep3 - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
p5-AcePerl - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-Bio-ASN1-EntrezGene - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-Bio-Das - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-Bio-Phylo - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-bioperl - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-bioperl-devel Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-bioperl-run - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-bioperl-run-devel Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
paml Reset dbader@eece.unm.edu due to maintainer-timeouts. 2007-03-11 03:21:18 +00:00
phylip - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
platon - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
povchem - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
primer3 - Update to 1.1.3 2008-04-04 20:46:35 +00:00
protomol - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
psi88 Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:41:22 +00:00
py-biopython - Fix typos. 2007-05-31 03:49:14 +00:00
pymol - Add missing dependens 2008-03-27 11:20:17 +00:00
rasmol - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
recombine Fix master sites, un-deprecate and update biology/recombine to 1.41. 2007-01-25 12:22:50 +00:00
ruby-bio - Update to 1.1.0 2007-10-24 01:38:51 +00:00
seaview - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
seqio Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
sim4
t_coffee - Update to 5.68 2008-04-05 10:47:11 +00:00
tinker - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
treepuzzle
treeviewx - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
tRNAscan-SE Reset chuynh@biolateral.com.au: address bounces. 2007-03-10 20:20:10 +00:00
wise Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
xdrawchem - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
xmolwt - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
Makefile MAPMAKER/EXP is a linkage analysis package designed to help construct primary 2008-04-06 04:49:05 +00:00