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freebsd-ports/science
History
Neel Chauhan 120163f680 science/afni: Update to 21.2.00
2021-07-13 21:22:30 -07:00
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2d-rewriter
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abinit
science/abinit: Remove PY_PYGMENTS
2021-06-21 00:16:17 +08:00
afni
science/afni: Update to 21.2.00
2021-07-13 21:22:30 -07:00
agrum
science/agrum: Update 0.20.2 -> 0.20.3
2021-06-11 17:19:55 -07:00
aircraft-datcom
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ALPSCore
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antioch
math/gsl: update to 2.7
2021-06-16 21:31:27 +02:00
apbs
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atompaw
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avogadro2
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
avogadrolibs
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
axom
science/axom: Update 0.4.0 -> 0.5.0
2021-05-16 09:15:43 -07:00
bagel
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bddsolve
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berkeleygw
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bodr
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buddy
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cdcl
Deorbit RESTRICTED && NO_CDROM, part two.
2021-05-06 13:47:48 +02:00
cdf
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cdk
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cdo
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cgnslib
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
cgribex
science/cgribex: Simplify Makefile
2021-05-12 05:47:00 +08:00
checkmol
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chemical-mime-data
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chemps2
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chemtool
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chemtool-devel
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chrono
devel/flatbuffers: Update 1.12.0 -> 2.0.0
2021-05-11 12:49:07 -07:00
clhep
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clipper
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code_saturne
science/code_saturne: upgrade to 7.0
2021-06-18 17:56:36 +02:00
colt
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conduit
science/conduit: Update 0.7.1 -> 0.7.2
2021-05-19 23:02:27 -07:00
coordgenlibs
science/coordgenlibs: Update 1.4.2 -> 2.0.3
2021-06-11 02:57:59 -07:00
cp2k
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cp2k-data
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crf++
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csvtk
science/csvtk: Cross-platform and ultrafast toolkit for CSV/TSV processing
2021-06-18 16:28:21 -05:00
dakota
math/gsl: update to 2.7
2021-06-16 21:31:27 +02:00
dalton
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dcl
Deorbit RESTRICTED && NO_CDROM, part two.
2021-05-06 13:47:48 +02:00
devisor
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dftbplus
science/dftbplus: fix BROKEN message
2021-05-25 11:06:44 +00:00
dkh
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dlib-cpp
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drawxtl
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
dvc
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eccodes
science/eccodes: Update to 2.22.0
2021-06-10 22:45:59 +08:00
elk
science/elk: Update 7.1.14 -> 7.2.42
2021-06-14 11:26:02 -07:00
elmerfem
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
epte
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erd
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ergo
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erkale
math/gsl: update to 2.7
2021-06-16 21:31:27 +02:00
erkale-pseudopotentials
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fastcap
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fasthenry
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fastjet
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fisicalab
math/gsl: update to 2.7
2021-06-16 21:31:27 +02:00
frontistr
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fsom
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fvcom
Deorbit RESTRICTED && NO_CDROM, part two.
2021-05-06 13:47:48 +02:00
fvcom-mpi
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gabedit
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
gamess-us
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gchemutils
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
gdma
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getdp
math/gsl: update to 2.7
2021-06-16 21:31:27 +02:00
ghemical
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
ghmm
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gnudatalanguage
math/gsl: update to 2.7
2021-06-16 21:31:27 +02:00
gpaw-setups
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gramps
*/*: Fix ENOTIME: return my ports to the pool
2021-05-22 10:13:01 +08:00
grib_api
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gromacs
science/gromacs: Update 2021.1 -> 2021.2
2021-05-06 20:44:01 -07:00
gsmc
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gtamsanalyzer
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h5utils
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h5z-zfp
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harminv
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hdf
science/hdf: add back the previously removed powerpc workaround
2021-06-16 22:33:27 +00:00
hdf5
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hdf5-18
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healpix
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hepmc3
science/hepmc3: Update 3.2.3 -> 3.2.4
2021-07-09 10:01:32 -07:00
highfive
science/highfive: Update 2.2.2 -> 2.3
2021-05-07 01:59:45 -07:00
hypre
science/hypre: Update 2.21.0 -> 2.22.0
2021-06-23 12:37:54 -07:00
iboview
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
InsightToolkit
*/*: Fix ENOTIME: return my ports to the pool
2021-05-22 10:13:01 +08:00
isaac-cfd
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jdftx
math/gsl: update to 2.7
2021-06-16 21:31:27 +02:00
jmol
science/jmol: Update 14.31.42 -> 14.31.44
2021-07-11 23:47:16 -07:00
jstrack
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kalzium
*/*: Update KDE Gear to 21.04.3
2021-07-10 01:34:31 +02:00
kim-api
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kst2
math/gsl: update to 2.7
2021-06-16 21:31:27 +02:00
lammps
science/lammps: Update 14May2021 -> 2Jul2021
2021-07-02 17:53:21 -07:00
lamprop
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latte
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libaec
science/libaec: Update to 1.0.5
2021-06-21 04:45:42 +08:00
libccp4
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libcint
science/libcint: Update 4.4.1 -> 4.4.2
2021-07-09 10:01:31 -07:00
libctl
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libecpint
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libefp
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libgeodecomp
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libghemical
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
libgridxc
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libint
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libint2
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libkml
devel/googletest: update to 1.11.0
2021-06-12 03:25:45 +00:00
liblinear
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libmsym
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liboglappth
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
libquantum
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libssm
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libsvm
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libsvm-python
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libvdwxc
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libxc
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liggghts
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luscus
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
madness
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maeparser
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massxpert
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mbdyn
math/suitesparse: adapt dependency lines after modularization
2021-05-25 12:00:10 +02:00
mcstas
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mcstas-comps
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mcxtrace
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mcxtrace-comps
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mdynamix
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medit
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
metaphysicl
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minc2
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mmdb2
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mmtf-cpp
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mol2ps
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molgif
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molscript
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
molsketch
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mpb
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mpqc
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msms
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multiwfn
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namd
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nest
science/nest: fix build on powerpc
2021-06-30 20:37:50 +00:00
netcdf
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netcdf-cxx
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netcdf-fortran
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nifticlib
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nwchem
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nwchem-data
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octopus
math/gsl: update to 2.7
2021-06-16 21:31:27 +02:00
openbabel
science/coordgenlibs: Update 1.4.2 -> 2.0.3
2021-06-11 02:57:59 -07:00
openkim
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openkim-models
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opensim-core
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
opensph
science/opensph: Update 0.3.5 -> 0.3.6
2021-07-13 20:55:48 -07:00
opsin
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orthanc
science/orthanc: Revive port
2021-06-08 14:15:17 -04:00
p5-Algorithm-SVMLight
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p5-Chemistry-3DBuilder
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p5-Chemistry-Bond-Find
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p5-Chemistry-Canonicalize
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p5-Chemistry-Elements
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p5-Chemistry-File-MDLMol
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p5-Chemistry-File-Mopac
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p5-Chemistry-File-PDB
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p5-Chemistry-File-SLN
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p5-Chemistry-File-SMARTS
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p5-Chemistry-File-SMILES
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p5-Chemistry-File-VRML
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p5-Chemistry-File-XYZ
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p5-Chemistry-FormulaPattern
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p5-Chemistry-InternalCoords
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p5-Chemistry-Isotope
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p5-Chemistry-MacroMol
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p5-Chemistry-MidasPattern
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p5-Chemistry-Mok
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p5-Chemistry-Mol
science/p5-Chemistry-Mol: Update to 0.38
2021-05-31 03:55:14 +08:00
p5-Chemistry-Pattern
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p5-Chemistry-Reaction
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p5-Chemistry-Ring
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p5-Geo-BUFR
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p5-Geo-Coordinates-Converter
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p5-Geo-Coordinates-Converter-iArea
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p5-Geo-WebService-Elevation-USGS
science/p5-Geo-WebService-Elevation-USGS: Update to 0.119
2021-05-31 03:55:16 +08:00
p5-Mcstas-Tools
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p5-PerlMol
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p5-Physics-Unit
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packmol
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pagmo2
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paje
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pcmsolver
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PETSc
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plumed
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pnetcdf
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pulseview
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py-abipy
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py-access
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py-asdf
science/py-asdf: Update to 2.8.1
2021-06-15 01:40:23 +08:00
py-ase
science/py-ase: Update 3.21.1 -> 3.22.0
2021-06-28 01:08:47 -07:00
py-avogadrolibs
science/py-avogadrolibs: Update 1.93.0 -> 1.94.0
2021-06-04 10:56:40 -07:00
py-cdo
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py-chainer
science/py-chainer: Update 7.7.0 -> 7.8.0
2021-06-20 10:47:20 -07:00
py-chainer-chemistry
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py-chempy
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
py-coards
science/py-coards: Cosmetic change
2021-05-12 05:47:18 +08:00
py-DendroPy
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py-dipy
science/py-dipy: Update 1.4.0 -> 1.4.1
2021-05-06 10:59:23 -07:00
py-dlib
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py-eccodes
science/py-eccodes: Update to 1.3.3
2021-06-21 00:16:03 +08:00
py-esda
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py-geolinks
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py-geomet
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py-geometer
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py-geometric
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py-gpaw
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
py-GPy
science/py-GPy: Update 1.9.9 -> 1.10.0
2021-05-22 01:33:34 -07:00
py-GPyOpt
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py-gsd
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py-h5json
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py-h5py
science/py-h5py: Update to 3.3.0
2021-07-01 04:43:44 +08:00
py-inequality
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py-jupyter_jsmol
science/py-jupyter_jsmol: Remove PY_PYGMENTS
2021-06-21 00:16:17 +08:00
py-kim-query
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py-kinematics
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py-kliff
science/py-kliff: Update 0.2.0 -> 0.2.2
2021-05-25 23:59:06 -07:00
py-liac-arff
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py-libpysal
science/py-libpysal: Update to 4.5.1
2021-07-06 22:57:09 +08:00
py-lifelines
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py-MDAnalysis
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
py-MDAnalysisTests
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py-mdp
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py-mmtf-python
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py-molmod
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py-moltemplate
science/py-moltemplate: Update 2.19.10 -> 2.19.11
2021-06-22 14:54:17 -07:00
py-netCDF4
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py-netcdf-flattener
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py-nibabel
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py-nilearn
science/py-nilearn: Update 0.7.1 -> 0.8.0
2021-06-18 10:16:59 -07:00
py-obspy
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
py-oddt
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py-OpenFermion
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py-openpiv
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py-paida
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py-paramz
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py-phono3py
science/py-phono3py: Remove unnecessary build dependency on math/lapacke
2021-06-08 20:32:22 -07:00
py-phonopy
science/py-phonopy: Update 2.9.3 -> 2.10.0
2021-06-11 02:57:58 -07:00
py-pupynere
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py-pyaixi
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py-pycsw
graphics/py-pyproj: Update to 3.1.0
2021-05-27 02:59:53 +08:00
py-pydicom
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py-PyFR
science/py-PyFR: Update 1.12.0 -> 1.12.1
2021-06-05 11:53:10 -07:00
py-pygeodesy
science/py-pygeodesy: Update to 21.6.16
2021-06-21 04:46:40 +08:00
py-pygeometa
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py-pygmo2
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py-pymatgen
science/py-pymatgen: Update 2022.0.9 -> 2022.0.10
2021-07-04 12:26:49 -07:00
py-pymol
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
py-pyosf
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py-pysal
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py-pyscf
science/py-pyscf: New port: Python module for quantum chemistry
2021-06-05 13:01:38 -07:00
py-pyteomics
science/py-pyteomics: Change RUN_DEPENDS from py-sqlalchemy13 to py-sqlalchemy14
2021-05-12 05:47:18 +08:00
py-qcelemental
science/py-qcelemental: Update 0.19.0 -> 0.20.0
2021-05-17 09:16:55 -07:00
py-qcengine
science/py-qcengine: Update 0.18.0 -> 0.19.0
2021-05-17 09:16:55 -07:00
py-qspin
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py-quantities
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py-rmf
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py-rmsd
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py-ruffus
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py-scikit-fuzzy
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py-scikit-learn
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py-scikit-optimize
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
py-scikit-sparse
math/suitesparse: adapt dependency lines after modularization
2021-05-25 12:00:10 +02:00
py-scimath
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py-scipy
science/py-scipy: Fix required python version
2021-06-01 11:12:07 +08:00
py-scoria
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py-segregation
science/py-segregation: Update to 2.0.0
2021-06-21 00:16:03 +08:00
py-segyio
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py-SimpleSpectral
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py-skrebate
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py-spaghetti
science/py-spaghetti: Update to 1.6.2
2021-07-06 22:57:12 +08:00
py-spglib
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py-tensorflow
science/py-tensorflow: Update 1.14.0 -> 1.15.5
2021-07-08 17:31:37 -07:00
py-tobler
science/py-tobler: Update to 0.8.2
2021-07-06 22:57:14 +08:00
py-veusz
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pybrain
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pynn
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qbox
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qcl
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qiskit-aer
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qmcpack
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quantum-espresso
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quantum-espresso-pseudopotentials
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qwalk
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R-cran-AMORE
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R-cran-bayesm
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R-cran-cmprsk
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R-cran-DCluster
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R-cran-e1071
science/R-cran-e1071: Update to 1.7-7
2021-05-26 13:01:42 +09:00
R-cran-eco
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R-cran-Epi
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R-cran-epicalc
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R-cran-etm
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R-cran-FAdist
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R-cran-fastICA
science/R-cran-fastICA: Update to 1.2-2 and take maintainership
2021-05-10 11:59:19 -04:00
R-cran-kernlab
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R-cran-snow
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R-cran-som
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R-cran-udunits2
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rdkit
science/rdkit: Update 2021.03.3 -> 2021.03.4
2021-07-11 19:10:30 -07:00
rmf
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rubygem-ai4r
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rubygem-cdo
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rubygem-rgeo
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rubygem-rgeo-geojson
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rubygem-rgeo-proj4
science/rubygem-rgeo-proj4: Update to 3.0.1
2021-05-12 05:47:29 +08:00
rubygem-rgeo-shapefile
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rubygem-ruby-dcl
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rubygem-ruby-netcdf
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scidavis
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
segyio
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shelxle
science/shelxle: Update 1.0.1275 -> 1.0.1278
2021-06-30 10:47:13 -07:00
siesta
science/siesta: Broken on aarch64, powerpc* due to lack of IEEE754 support in gcc
2021-05-18 21:07:41 -07:00
sigrok-cli
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sigrok-firmware
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sigrok-firmware-fx2lafw
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sigrok-firmware-utils
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silo
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simbody
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
simgrid
science/simgrid: enable libunwind on armv7
2021-06-28 20:27:33 +00:00
simint
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simlib
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simsmith
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smoldyn
science/smoldyn: Update 2.65 -> 2.66
2021-06-20 10:58:51 -07:00
sparta
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spglib
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step
*/*: Update KDE Gear to 21.04.3
2021-07-10 01:34:31 +02:00
svmlight
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szip
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teem
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tfel
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tfel-edf
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thermofun
science/thermofun: Update 0.3.7 -> 0.3.8
2021-06-28 15:46:19 -07:00
tinker
science/tinker: Update 8.8.3 -> 8.9.1
2021-05-13 16:42:00 -07:00
udunits
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v_sim
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
vipster
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
vmd
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
voro++
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votca
…
wannier90
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wwplot
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
wxmacmolplt
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
xcfun
science/xcfun: fix build on GCC-based systems
2021-06-07 06:38:43 -05:00
xcrysden
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
xdrawchem
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
xtb
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yoda
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Makefile
science/csvtk: Cross-platform and ultrafast toolkit for CSV/TSV processing
2021-06-18 16:28:21 -05:00