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mirror of https://git.FreeBSD.org/ports.git synced 2024-10-18 19:49:40 +00:00
freebsd-ports/science
2019-06-09 16:52:36 +00:00
..
2d-rewriter
abinit science/abinit: Fix libomp.so in LDFLAGS (this also might fix the breakage on 13) 2019-05-19 03:01:48 +00:00
afni science/afni: Upgrade to 19.1.18 2019-06-08 19:14:18 +00:00
agrum Those ports link against llvm's libomp.so 2019-05-11 09:36:21 +00:00
aircraft-datcom Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
ALPSCore science/ALPSCore: Fix OPENMPI2 spelling after r500723 2019-05-04 11:02:15 +00:00
antioch science/metaphysicl: Update 0.3.3 -> 0.5.0 2019-05-03 03:46:01 +00:00
apbs science/apbs: Fix license 2019-05-03 06:15:44 +00:00
atom Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
atompaw Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
avogadro2
avogadrolibs science/avogadrolibs: Update 1.92.0 -> 1.92.1 2019-05-11 18:10:31 +00:00
bagel Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
bddsolve
berkeleygw Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
bodr
brian
buddy
cdcl
cdf Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
cdo
cgnslib Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
cgribex
checkmol
chemical-mime-data
chemps2 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
chemtool
chemtool-devel
chrono science/chrono: Broken on i386 2019-05-18 22:28:29 +00:00
clhep
clipper science/clipper: add USES=compiler:c++11-lang 2019-05-11 20:30:19 +00:00
code_saturne Switch to Python 3.6 and upgrade to v5.3.3. 2019-05-19 19:22:45 +00:00
colt
coordgenlibs
coot science/coot: Fix build with GCC-based architectures 2019-05-11 20:40:33 +00:00
cp2k Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
cp2k-data
crf++
dalton Fix the a ports that were broken but did not know it. 2019-05-03 13:58:33 +00:00
datawarrior
dcl Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
devisor
dftbplus science/dftbplus: Fix libomp.so in LDFLAGS (this also might fix the breakage on 13) 2019-05-19 02:47:01 +00:00
dkh Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
dlib-cpp Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
dlpoly-classic Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
drawxtl
dvc
eccodes Update to 2.12.5 2019-05-25 22:02:44 +00:00
elk Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
epte
erd Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
erkale Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
erkale-pseudopotentials
esys-particle science/esys-particle: Broken on 13-CURRENT 2019-05-18 22:58:19 +00:00
fastcap
fasthenry
fisicalab
fleur Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
fsom
fvcom Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
fvcom-mpi
gabedit science/gabedit: Unbreak on 13: /usr/lib/libomp.so conflicting with the 'openmp' package has been added to 13-CURRENT 2019-05-19 02:38:14 +00:00
gamess-us Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
gchemutils
gdma Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
getdp Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
ghemical Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
ghmm
gnudatalanguage Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
gpaw-setups
gramps
grib_api
gromacs devel/openmp: phase out 2019-05-08 16:05:53 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils
h5z-zfp
harminv science/harminv: Add -fPIC 2019-05-04 02:08:19 +00:00
hdf Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
hdf5 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
hdf5-18 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
healpix These ports now build on aarch64. 2019-05-03 21:06:51 +00:00
hypre science/hypre: Update 2.15.1 -> 2.16.0 2019-05-13 07:57:57 +00:00
iboview Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
InsightToolkit - Update devel/gdcm to 3.0.0. 2019-06-01 21:59:13 +00:00
isaac-cfd Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
jdftx Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
jmol science/jmol: Update 14.29.42 -> 14.29.46 2019-06-07 05:59:51 +00:00
jstrack
kalzium Update KDE Applications to 19.04.2 2019-06-07 04:08:25 +00:00
kst2 science/kst2: 2019-04-21 20:53:50 +00:00
lammps science/lammps: Add the PORTSCOUT=ignore line 2019-06-09 04:22:37 +00:00
lamprop
latte devel/openmp: phase out 2019-05-08 16:05:53 +00:00
libaec
libccp4 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
libcint
libctl Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
libefp
libgeodecomp
libghemical Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
libgridxc Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
libint science/libint: Update 1-2-1 -> 1-2-1-15 2019-04-28 18:12:59 +00:00
libint2
libkml
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc New port: science/libvdwxc: Van der Waals density functional (DFT) library 2019-05-18 05:40:31 +00:00
libxc Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
liggghts Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
lm Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
luscus science/luscus: fix build with GCC-based architectures 2019-05-09 19:59:20 +00:00
madness Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
maeparser
massxpert science/massxpert: fix build with GCC-based architectures 2019-04-27 08:46:32 +00:00
mbdyn Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
mcstas
mcstas-comps Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
mcxtrace
mcxtrace-comps
mdynamix Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
medit Fix on head by setting LLD_UNSAFE: 2019-04-24 19:35:06 +00:00
meep Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
metaf2xml
metaphysicl science/metaphysicl: Update 0.3.3 -> 0.5.0 2019-05-03 03:46:01 +00:00
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
mpqc Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
msms
multiwfn Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
namd Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
nest science/nest: Broken on i386 2019-05-18 22:12:49 +00:00
netcdf Update to 4.7.0 2019-04-30 19:07:06 +00:00
netcdf-cxx
netcdf-fortran Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
nifticlib science/nifticlib: fix build 2019-06-08 19:24:18 +00:00
nwchem science/nwchem: Update 6.8.1.20190509 -> 6.8.1.20190606 2019-06-08 07:54:52 +00:00
nwchem-data
octopus Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
openbabel
openkim Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
openmx Chase devel/openmp expiration 2019-05-27 20:55:56 +00:00
opensim-core Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
opensph New port: science/opensph: Library and graphical tools for running SPH and N-body simulations 2019-05-26 04:08:09 +00:00
opsin science/opsin: Update 3.0.20190208 -> 3.0.20190223 2019-05-11 06:00:09 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.112 2019-04-19 23:27:17 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
pagmo2 New port: science/pagmo2: Platform to perform parallel computations of optimization tasks 2019-05-01 07:16:57 +00:00
paje
paraview Clean up plist 2019-04-25 13:51:20 +00:00
pcmsolver Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
PETSc Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
pnetcdf Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
psychopy Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
pulseview
py-abipy
py-asdf
py-ase
py-avogadrolibs
py-cdo
py-chempy
py-coards
py-DendroPy
py-dlib
py-eccodes-python Update to 0.9.1 2019-06-07 23:04:38 +00:00
py-geometer
py-gpaw science/py-gpaw: Update 1.5.1 -> 1.5.2 2019-05-09 20:12:51 +00:00
py-GPy science/py-GPy: Fix build by explicitly setting the path to libomp.so in xx_DEPENDS lines 2019-05-23 21:21:49 +00:00
py-GPyOpt
py-gsd
py-h5py
py-hcluster
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod
py-netCDF4 Cleanup cython dependency. 2019-05-11 21:10:31 +00:00
py-obspy Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
py-oddt
py-OpenFermion
py-openpiv
py-paida
py-paramz science/py-paramz: Update 0.9.4 -> 0.9.5 2019-05-18 15:56:47 +00:00
py-phono3py Chase devel/openmp expiration 2019-05-27 20:55:56 +00:00
py-phonopy science/py-phonopy: Update 2.0.0 -> 2.1.3 2019-05-08 06:35:50 +00:00
py-pupynere
py-pyaixi
py-pydicom
py-PyFR Chase devel/openmp expiration 2019-05-27 20:55:56 +00:00
py-pygeodesy
py-pymatgen science/py-pymatgen: Update 2019.1.24 -> 2019.2.28 2019-05-08 05:49:01 +00:00
py-pymol
py-pyosf
py-PyQuante
py-pysal
py-pyteomics Update to 4.1.2 2019-06-09 16:52:36 +00:00
py-pyteomics.biolccc
py-qcelemental science/py-qcelemental: Update 0.4.0 -> 0.4.1 2019-06-01 06:01:52 +00:00
py-qcengine
py-qspin
py-quantities
py-rmf
py-rmsd science/py-rmsd: Fix license 2019-05-26 18:17:15 +00:00
py-ScientificPython
py-scikit-fuzzy
py-scikit-learn - Update to 0.20.3 2019-05-14 02:17:08 +00:00
py-scikit-sparse Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
py-scimath
py-scipy Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
py-scoria
py-SimpleSpectral
py-spglib
py-veusz
py-ws2300
pybrain
pycdf
pynn
qbox science/qbox: Update 1_66_3 -> 1_67_1 2019-04-20 15:49:52 +00:00
qcl
qmcpack devel/openmp: phase out 2019-05-08 16:05:53 +00:00
quantum-espresso Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
quantum-espresso-pseudopotentials
qwalk Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071 - Update to 1.7-1 2019-06-02 07:44:51 +00:00
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
simbody Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
simgrid New port: science/simgrid: Simulator of the behavior of large-scale distributed systems 2019-05-16 16:00:15 +00:00
simint
simlib
simsmith
smoldyn New port: science/smoldyn: Biochemical simulator for molecular diffusion, surface interactions 2019-06-09 03:26:15 +00:00
sparta science/sparta: fix build with GCC-based architectures 2019-04-24 18:27:08 +00:00
spglib
step Update KDE Applications to 19.04.2 2019-06-07 04:08:25 +00:00
svmlight
szip
teem
tfel
tinker Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
udunits
v_sim Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
vipster
vmd
voro++
wannier90 Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
wxmacmolplt science/wxmacmolplt: fix build with GCC-based architectures 2019-05-20 20:09:32 +00:00
xcrysden Related to revision 499061 bump ports with USES=fortran to have them 2019-04-22 13:16:33 +00:00
xdrawchem
xfce4-equake-plugin
xmakemol
yoda
Makefile New port: science/smoldyn: Biochemical simulator for molecular diffusion, surface interactions 2019-06-09 03:26:15 +00:00