1
0
mirror of https://git.FreeBSD.org/ports.git synced 2024-12-23 04:23:08 +00:00
freebsd-ports/biology
Pawel Pekala dc58fc197a - Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]
- Fix spelling in pkg-descr

PR:		212682 [1]
Submitted by:	Hannes Hauswedell (maintainer) [1]
2016-09-14 19:38:58 +00:00
..
ariadne Cleanup $() variables in ports Makefiles. 2016-07-20 15:33:20 +00:00
artemis
avida
babel
bcftools biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1 2016-05-26 20:28:55 +00:00
bedtools biology/bedtools is not jobs safe 2016-08-22 04:32:18 +00:00
biococoa
biojava When there is a do-install target, do not use a post-install target, do 2016-07-19 11:04:13 +00:00
blat
bowtie
bowtie2
bwa
cd-hit
cdbfasta
chemeq
clustalw Remove useless WRKSRC definitions. 2016-05-25 15:43:34 +00:00
consed - Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with 2016-09-05 19:23:42 +00:00
crux
diamond - Update to 0.8.22 2016-09-13 17:50:31 +00:00
emboss - update libgd to 2.2.2 2016-07-20 09:33:31 +00:00
fasta
fasta3
fastdnaml
fastool
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic - LICENSE 2016-07-02 09:05:22 +00:00
grappa
hmmer
htslib biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1 2016-05-26 20:28:55 +00:00
iolib
jalview
jellyfish
lagan
lamarc - Switch to options helpers 2016-08-18 09:31:58 +00:00
libgtextutils
libsbml
linux-foldingathome - Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with 2016-09-05 19:23:42 +00:00
mafft
mapm3
migrate
molden biology/molden: 5.4 -> 5.7 2016-08-26 06:00:47 +00:00
mopac
mrbayes
mummer
muscle
ncbi-blast+ biology/ncbi-blast+: Remove redundant LIB_DEPENDS (bz2 libary) 2016-09-11 05:35:42 +00:00
ncbi-toolkit - Add missing dependency, fixing build 2016-06-24 09:04:45 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene - Update to 1.72 2016-09-11 05:26:01 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
p5-transdecoder
paml
phrap
phred
phylip
phyml
plink
plinkseq
primer3
protomol
psi88
py-biom-format - Fix run-time dependency issues 2016-06-11 09:25:04 +00:00
py-biopython
pycogent - Update to 1.9 [1] 2016-08-08 11:21:04 +00:00
pyfasta
python-nexus - Update to 1.35 2016-06-08 07:39:05 +00:00
recombine When there is a do-install target, do not use a post-install target, do 2016-07-19 11:04:13 +00:00
ruby-bio
samtools biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1 2016-05-26 20:28:55 +00:00
seaview biology/seaview: Update version 4.5.4.8=>4.6 2016-06-10 11:06:42 +00:00
seqan - Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1] 2016-09-14 19:38:58 +00:00
seqan1 When there is a do-install target, do not use a post-install target, do 2016-07-19 11:04:13 +00:00
seqan-apps - Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1] 2016-09-14 19:38:58 +00:00
seqio
seqtools biology/seqtools: 4.42.1 -> 4.43.0 2016-07-31 14:19:09 +00:00
sim4
slclust Remove unneeded usage of: 2016-06-06 15:25:42 +00:00
ssaha
t_coffee
tinker
treepuzzle
treeviewx GOOGLE_CODE has gone away. 2016-09-14 15:59:34 +00:00
trimmomatic
tRNAscan-SE
ugene
vcftools
velvet
wise - Switch to options helpers 2016-06-21 09:05:06 +00:00
xmolwt
Makefile Remove expired ports without open PRs: 2016-07-04 20:48:23 +00:00