John Marino d8155145ad biology/blat: Fix build with non-base SSL		2016-09-30 19:40:13 +00:00
..
ariadne
artemis
avida
babel
bcftools
bedtools	biology/bedtools is not jobs safe	2016-08-22 04:32:18 +00:00
biococoa
biojava
blat	biology/blat: Fix build with non-base SSL	2016-09-30 19:40:13 +00:00
bowtie
bowtie2
bwa
cd-hit
cdbfasta
chemeq
clustalw
consed	- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with	2016-09-05 19:23:42 +00:00
crux
diamond	Update email address to jrm@FreeBSD.org for ports that I maintain	2016-09-23 21:42:02 +00:00
emboss
fasta
fasta3
fastdnaml
fastool
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
htslib
iolib
jalview
jellyfish
lagan
lamarc	- Switch to options helpers	2016-08-18 09:31:58 +00:00
libgtextutils
libsbml
linux-foldingathome	- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with	2016-09-05 19:23:42 +00:00
mafft
mapm3
migrate
molden	biology/molden: 5.4 -> 5.7	2016-08-26 06:00:47 +00:00
mopac
mrbayes
mummer
muscle
ncbi-blast+	biology/ncbi-blast+: Remove redundant LIB_DEPENDS (bz2 libary)	2016-09-11 05:35:42 +00:00
ncbi-toolkit
p5-AcePerl
p5-Bio-ASN1-EntrezGene	- Update to 1.72	2016-09-11 05:26:01 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
p5-transdecoder
paml	Update PORTREVISION and dinstinfo due to upstream tarball change	2016-09-29 21:12:50 +00:00
phrap
phred
phylip
phyml
plink
plinkseq
primer3
protomol
psi88
py-biom-format	Update email address to jrm@FreeBSD.org for ports that I maintain	2016-09-23 21:42:02 +00:00
py-biopython	- Update to 1.68	2016-09-23 01:54:45 +00:00
pycogent	- Update to 1.9 [1]	2016-08-08 11:21:04 +00:00
pyfasta
python-nexus
recombine
ruby-bio
samtools
seaview
seqan	- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]	2016-09-14 19:38:58 +00:00
seqan1
seqan-apps	- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]	2016-09-14 19:38:58 +00:00
seqio
seqtools
sim4
slclust
ssaha
t_coffee
tinker
treepuzzle
treeviewx	GOOGLE_CODE has gone away.	2016-09-14 15:59:34 +00:00
trimmomatic
tRNAscan-SE
ugene
vcftools
velvet
wise
xmolwt
Makefile