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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-12 03:00:28 +00:00
freebsd-ports/science
Olivier Duchateau 63dc4e1fc8 - Update to 1.3.8.1
- Adjust dependencies
2017-03-05 08:09:35 +00:00
..
2d-rewriter - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
afni science/afni: Use BUILD_DEPENDS/RUN_DEPENDS instead of LIB_DEPENDS for 2016-11-29 21:15:41 +00:00
avogadro devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
bddsolve devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
bft
bodr Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
brian math/py-numpy: track PORTEPOCH in consumers 2016-10-28 17:13:24 +00:00
buddy
cdcl Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
cdf Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
cdo Update to 1.8.0 2017-02-16 16:45:27 +00:00
cgnslib Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
cgribex Add GRIB_API option 2017-02-12 08:20:20 +00:00
checkmol - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:48:32 +00:00
chemical-mime-data Use USES=pathfix where applicable. 2016-10-21 15:21:13 +00:00
chemtool Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
chemtool-devel Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
clhep - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-11 10:08:38 +00:00
colt The output of tools like awk, date, sort, tr,... depends on the current 2017-01-18 13:20:31 +00:00
crf++ Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
dcl Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
devisor
dlpoly-classic Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
ecs Remove useless WRKSRC definitions. 2016-05-25 15:43:34 +00:00
epte science/epte: Add forgetten patch hunk from previous commit 2016-08-28 05:56:01 +00:00
fastcap Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fasthenry Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fisicalab Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvcom Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
fvcom-mpi Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvm Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
gchemutils Update gchemutils to 0.14.16. 2016-12-31 19:43:21 +00:00
getdp getdp builds fine with bsd make 2016-12-10 18:38:34 +00:00
ghemical Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
ghmm - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
gnudatalanguage Re-enable the opthion for math/qhull. 2017-02-07 21:20:47 +00:00
gramps science/gramps: Update to 4.2.5 2016-12-19 12:52:40 +00:00
grib_api Update to 1.20.0 2017-02-16 16:45:32 +00:00
gromacs devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
gsmc Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
gtamsanalyzer
gwyddion Most commonly used build systems support silent builds, when they 2016-09-09 19:42:46 +00:00
h5utils - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
harminv Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hdf Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hdf5 Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hdf5-18 Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hs-bio
InsightToolkit science/InsightToolkit: Fix pkg-plist post r433341 2017-02-11 16:25:28 +00:00
isaac-cfd Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
jstrack Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
kalzium Introduce new extensible virtual categories for KDE 2016-10-18 17:22:35 +00:00
kst2 Reassign makc's ports back to the pool. 2016-10-20 15:58:12 +00:00
lamprop
libaec Add libaec 1.0.0 2017-01-01 01:47:21 +00:00
libctl Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
libgeodecomp add science/libgeodecomp - auto-parallelizing library for computer simulations 2017-01-31 23:37:58 +00:00
libghemical Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
libint Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-11-20 09:38:08 +00:00
libkml Update to 1.3.0 2017-01-12 20:02:17 +00:00
liblinear - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
liboglappth
libquantum
libsvm When there is a do-install target, do not use a post-install target, do 2016-07-19 11:04:13 +00:00
libsvm-python
libxc - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-11 10:08:38 +00:00
linsmith
massxpert Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-11-20 09:38:08 +00:00
mbdyn Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
mcstas Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
mcstas-comps Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
medit Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
meep - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-11 10:08:38 +00:00
mei Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
metaf2xml The correct way to check for Perl's version is with PERL_LEVEL. 2016-10-27 17:21:09 +00:00
minc2 ${RM} already has -f. 2016-10-21 12:51:40 +00:00
mol2ps - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:50:29 +00:00
mpb Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
mpqc Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
mpqc-mpich
ncs Switch ports to use USE_PYQT=<foo> instead of using RUN_- and BUILD_DEPENDS 2017-02-04 13:37:15 +00:00
netcdf - Update to 4.4.1.1 2016-11-22 18:42:56 +00:00
netcdf-cxx - Update to 4.3.0 2016-05-15 16:12:00 +00:00
netcdf-fortran Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
nifticlib Pass -fPIC when building the port's static libraries. 2016-12-28 14:54:37 +00:00
openbabel science/openbabel: unbreak with GCC >= 6 2017-01-21 23:12:18 +00:00
openkim Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
orthanc devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
orthanc-dicomweb devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
orthanc-postgresql devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
orthanc-webviewer devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
p5-Algorithm-SVMLight Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-3DBuilder Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Bond-Find Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Canonicalize Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Elements - Update to 1.071 2016-12-31 13:34:26 +00:00
p5-Chemistry-File-MDLMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-Mopac Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-PDB Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SLN Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMARTS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMILES Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-VRML Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-XYZ Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-FormulaPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-InternalCoords Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-MidasPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Mok Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
p5-Chemistry-Mol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Pattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Reaction Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Ring Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-BUFR - Update to 1.36 2016-12-03 07:59:16 +00:00
p5-Geo-Coordinates-Converter Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-Coordinates-Converter-iArea Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Mcstas-Tools Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
p5-PerlMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Physics-Unit Bump PORTREVISION for ports affected by the fix the last commit. 2017-01-31 16:21:45 +00:00
paje
paraview - Update to 5.2.0 2017-01-10 10:59:01 +00:00
pnetcdf Add OPENMPI2 option 2017-02-01 19:43:51 +00:00
psychopy Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
pulseview devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
py-cdo Update to 1.3.3 2017-02-25 09:55:24 +00:00
py-coards Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested. 2016-06-23 09:48:53 +00:00
py-DendroPy Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
py-h5py - Remove bogus NO_ARCH: this module installs .so files 2016-11-24 14:57:16 +00:00
py-hcluster - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
py-mdp science/py-mdp: Update version 3.3=>3.5 2016-04-10 19:04:12 +00:00
py-mlpy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-netCDF4 science/py-netCDF4: Update version 1.2.4=>1.2.7 2017-02-25 19:07:33 +00:00
py-obspy - Update to 1.0.3 2017-02-28 23:38:44 +00:00
py-paida Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
py-pupynere Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested. 2016-06-23 09:48:53 +00:00
py-pyaixi Convert CC license names to r421995 spellings 2016-09-28 06:38:00 +00:00
py-pydicom Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
py-pysal - Update to 1.13.0 2016-12-12 20:58:04 +00:00
py-pyteomics Update to 3.4.1. 2017-02-22 01:45:24 +00:00
py-pyteomics.biolccc Reassign makc's ports back to the pool. 2016-10-20 15:58:12 +00:00
py-scikit-fuzzy - Update to 0.2 2016-06-30 08:09:29 +00:00
py-scikit-learn Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
py-scikit-sparse Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
py-scimath Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scipy Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
py-ws2300 - Update to 1.10 2016-12-29 01:39:00 +00:00
pybrain - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
pycdf In several dozen ports, use single space for WWW: line in pkg-descr, and 2016-11-22 14:04:21 +00:00
pynn - Update to 0.8.2 2016-12-28 08:01:30 +00:00
qcl - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
qtresistors Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
R-cran-AMORE
R-cran-bayesm - Update to 3.0.2 2016-05-26 01:29:33 +00:00
R-cran-cmprsk
R-cran-DCluster Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.7 2016-10-15 04:49:01 +00:00
R-cran-epicalc
R-cran-etm
R-cran-snow - Update to 0.4-2 2016-10-16 04:21:12 +00:00
R-cran-som - Update to 0.3-5.1 2016-07-21 03:18:24 +00:00
rubygem-ai4r Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-cdo Update to 1.3.3 2017-02-25 09:55:29 +00:00
rubygem-ruby-dcl Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-ruby-netcdf science/rubygem-ruby-netcdf: update to 0.7.2 2017-01-02 14:59:14 +00:00
sigrok-cli Take maintainership. 2016-10-09 21:25:24 +00:00
sigrok-firmware Take maintainership. 2016-10-09 21:25:24 +00:00
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2lafw: Update to version 0.1.4. 2016-11-03 18:30:42 +00:00
sigrok-firmware-utils Take maintainership. 2016-10-09 21:25:24 +00:00
silo Get rid of QT_PREFIX in favour of PREFIX. 2016-12-18 22:06:50 +00:00
simlib Fix some misspellings that crept in on the last tier-2 cleanup pass. 2016-11-16 09:29:15 +00:00
simsmith
step Introduce new extensible virtual categories for KDE 2016-10-18 17:22:35 +00:00
svmlight - With license framework, there's no longer need to shove license to docs, pkgmessage and restricted 2017-01-30 09:01:22 +00:00
szip Add libaec 1.0.0 2017-01-01 01:47:21 +00:00
tfel - Update to 2.0.4 2017-01-19 18:14:22 +00:00
udunits Update to 2.2.24 2017-01-25 16:31:27 +00:00
v_sim Change the site address. 2017-01-16 21:38:39 +00:00
veusz Switch ports to use USE_PYQT=<foo> instead of using RUN_- and BUILD_DEPENDS 2017-02-04 13:37:15 +00:00
vmd science/vmd: correct the wording of numpy keyword 2017-01-09 06:03:05 +00:00
voro++
xfce4-equake-plugin - Update to 1.3.8.1 2017-03-05 08:09:35 +00:00
xmakemol - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
Makefile add science/libgeodecomp - auto-parallelizing library for computer simulations 2017-01-31 23:37:58 +00:00