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freebsd-ports/biology
History
Wen Heping c7aa0a29eb - Update to 2.28 
ChangeLog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.28/Changes
2012-04-17 13:02:59 +00:00
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adun
- fix build with gcc46
2012-02-07 05:36:27 +00:00
ariadne
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artemis
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avida
Change maintainer address to my FreeBSD address
2011-09-15 12:33:27 +00:00
babel
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belvu
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biococoa
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biojava
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blast
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blat
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boinc-simap
- Fix fetch and update WWW
2011-11-04 20:39:12 +00:00
chemeq
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clustalw
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
2011-08-11 19:20:17 +00:00
consed
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crux
Does not build on powerpc-9: error in pthreads.
2011-11-10 14:30:51 +00:00
dna-qc
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dotter
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embassy
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
emboss
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
fasta
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fasta3
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
fastdnaml
- Fix MASTER_SITES and WWW: line
2011-08-26 00:24:48 +00:00
finchtv
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fluctuate
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garlic
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genpak
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gff2ps
- Update MASTER_SITES and WWW: line
2012-02-19 23:24:52 +00:00
gmap
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gperiodic
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grappa
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hmmer
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iolib
- Remove WITH_FBSD10_FIX, is no longer needed
2011-11-09 15:26:04 +00:00
jalview
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lagan
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lamarc
- The proper acronym for Apache Software License 2 is really AL2
2012-01-09 15:41:08 +00:00
libgenome
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libsbml
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linux-foldingathome
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mafft
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mapm3
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migrate
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molden
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
mopac
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
mrbayes
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mummer
- Update to 3.23
2012-01-17 00:51:39 +00:00
muscle
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ncbi-toolkit
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
njplot
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ortep3
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p5-AcePerl
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
p5-Bio-ASN1-EntrezGene
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
p5-Bio-Das
- Revert ports/165605 as requested by portmgr@
2012-03-13 16:15:36 +00:00
p5-Bio-Das-Lite
- Fix missing DEPENDS to silence build warnings
2011-09-24 20:45:23 +00:00
p5-Bio-GFF3
- Update to 1.2
2012-04-16 13:06:04 +00:00
p5-Bio-Glite
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
2012-01-21 17:40:15 +00:00
p5-Bio-Graphics
- Update to 2.28
2012-04-17 13:02:59 +00:00
p5-Bio-MAGETAB
- Update to 1.22
2012-02-09 03:28:51 +00:00
p5-Bio-NEXUS
- Update to 0.78
2012-02-11 02:04:41 +00:00
p5-Bio-Phylo
- Update to 0.47
2012-04-11 01:34:57 +00:00
p5-Bio-SCF
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
2012-01-21 17:40:15 +00:00
p5-bioperl
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
2012-01-21 17:40:15 +00:00
p5-bioperl-run
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
2012-01-21 17:40:15 +00:00
paml
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phd2fasta
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phrap
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phred
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phylip
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phyml
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platon
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
povchem
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primer3
- Respect CC
2012-01-27 17:41:00 +00:00
protomol
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
psi88
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py-biopython
- Update to 1.59
2012-03-06 06:40:50 +00:00
pycogent
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pyfasta
- Update to 0.4.5
2012-02-23 13:43:25 +00:00
pymol
update to 1.5.0.1.
2012-02-16 02:30:10 +00:00
python-nexus
- Update to 0.87
2011-12-23 08:05:00 +00:00
rasmol
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recombine
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ruby-bio
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seaview
Chase pdflib.so version and bump PORTREVISION accordingly.
2012-01-10 11:41:37 +00:00
seqio
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sim4
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ssaha
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t_coffee
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
tinker
- ${FFLAGS} might contain commas
2011-10-10 20:17:22 +00:00
treepuzzle
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treeviewx
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
tRNAscan-SE
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velvet
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wise
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xdrawchem
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
xmolwt
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
Makefile
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