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freebsd-ports/biology
History
Carlo Strub 2f103993ae Remove non-serving mirror
2012-05-20 12:04:26 +00:00
..
adun
- fix build with gcc46
2012-02-07 05:36:27 +00:00
ariadne
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
artemis
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
2011-07-21 05:03:02 +00:00
avida
Change maintainer address to my FreeBSD address
2011-09-15 12:33:27 +00:00
babel
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
belvu
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
biococoa
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
biojava
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
blast
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
blat
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
boinc-simap
- Adjust BOINC_* variables to be consistent with new system in boinc-client
2012-05-16 13:46:30 +00:00
chemeq
Remove WWW entries from unmaintained ports that return 404 or where the domain
2011-08-02 20:58:23 +00:00
clustalw
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
2011-08-11 19:20:17 +00:00
consed
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
crux
Does not build on powerpc-9: error in pthreads.
2011-11-10 14:30:51 +00:00
dna-qc
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
dotter
- Updated WWW: to a working link
2011-04-22 18:59:11 +00:00
embassy
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
emboss
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
fasta
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
fasta3
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
fastdnaml
- Fix MASTER_SITES and WWW: line
2011-08-26 00:24:48 +00:00
finchtv
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
fluctuate
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
garlic
Update to 1.6. Web site has been moved.
2011-05-11 05:55:27 +00:00
genpak
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
gff2ps
- Update MASTER_SITES and WWW: line
2012-02-19 23:24:52 +00:00
gmap
- fix fetch: wget is not required for fetching
2010-12-12 08:10:05 +00:00
gperiodic
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
grappa
Update to GNU make 3.82 after numerous -exp runs.
2011-04-11 19:54:35 +00:00
hmmer
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
iolib
- Remove WITH_FBSD10_FIX, is no longer needed
2011-11-09 15:26:04 +00:00
jalview
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
2011-07-21 05:03:02 +00:00
lagan
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
lamarc
Remove non-serving mirror
2012-05-20 12:04:26 +00:00
libgenome
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
libsbml
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
linux-foldingathome
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
mafft
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
mapm3
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
migrate
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
molden
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
mopac
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
mrbayes
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
mummer
- Update to 3.23
2012-01-17 00:51:39 +00:00
muscle
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
ncbi-toolkit
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
njplot
Bump PORTREVISION after open-mofit update
2011-05-02 12:44:53 +00:00
ortep3
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
p5-AcePerl
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
p5-Bio-ASN1-EntrezGene
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
p5-Bio-Das
- Revert ports/165605 as requested by portmgr@
2012-03-13 16:15:36 +00:00
p5-Bio-Das-Lite
- Fix missing DEPENDS to silence build warnings
2011-09-24 20:45:23 +00:00
p5-Bio-GFF3
- Update to 1.3
2012-04-26 10:37:09 +00:00
p5-Bio-Glite
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
2012-01-21 17:40:15 +00:00
p5-Bio-Graphics
- Update to 2.28
2012-04-17 13:02:59 +00:00
p5-Bio-MAGETAB
- Update to 1.22
2012-02-09 03:28:51 +00:00
p5-Bio-NEXUS
- Update to 0.78
2012-02-11 02:04:41 +00:00
p5-Bio-Phylo
- Update to 0.48
2012-05-03 09:48:21 +00:00
p5-Bio-SCF
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
2012-01-21 17:40:15 +00:00
p5-bioperl
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
2012-01-21 17:40:15 +00:00
p5-bioperl-run
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
2012-01-21 17:40:15 +00:00
paml
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phd2fasta
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phrap
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phred
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phylip
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
phyml
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
platon
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
povchem
Switch dependency on povray to povray-meta port.
2011-06-20 22:32:03 +00:00
primer3
- Respect CC
2012-01-27 17:41:00 +00:00
protomol
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
psi88
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
py-biopython
- Update to 1.59
2012-03-06 06:40:50 +00:00
pycogent
- Update to 1.5.1
2011-08-11 11:37:18 +00:00
pyfasta
- Update to 0.4.5
2012-02-23 13:43:25 +00:00
pymol
update to 1.5.0.1.
2012-02-16 02:30:10 +00:00
python-nexus
- Update to 0.87
2011-12-23 08:05:00 +00:00
rasmol
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
recombine
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
ruby-bio
- Fix pkg-plist, got the wrong version before
2010-12-30 23:08:47 +00:00
seaview
Chase pdflib.so version and bump PORTREVISION accordingly.
2012-01-10 11:41:37 +00:00
seqio
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
sim4
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
ssaha
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
t_coffee
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
tinker
- ${FFLAGS} might contain commas
2011-10-10 20:17:22 +00:00
treepuzzle
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
treeviewx
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
tRNAscan-SE
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
velvet
Update to 1.1.04
2011-06-09 16:33:21 +00:00
wise
- Get Rid MD5 support
2011-03-19 12:38:54 +00:00
xdrawchem
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
xmolwt
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
Makefile
Bye bye abandonwares (part 2)
2011-08-01 04:29:44 +00:00