Alexey Dokuchaev 9dc680d0e8 - Update to version 1.13.0 and improve FreeBSD support; it also builds ... pretty cleanly with GCC v4.2, v4.6, and Clang (modulo a few warnings) - Sadly, do not use PORTDOCS: since DOCSDIR is set to be inside DATADIR, and will get appended to PLIST after @dirrm %%DATADIR%%, which upsets sanity checking tools; instead, list the docs explicitly in DISTFILES and add them to pkg-plist (guarded by %%PORTDOCS%%) Tested on: i386 (only)		2014-01-16 17:17:15 +00:00
..
ariadne
artemis
avida
babel	Support stage	2014-01-15 22:44:13 +00:00
biococoa
biojava	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
blast	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
blat
boinc-simap
chemeq
clustalw
consed	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
crux	Python cleanup:	2014-01-13 21:00:02 +00:00
embassy	Reduce over inclusion of bsd.port.mk	2014-01-15 22:48:32 +00:00
emboss
fasta	Reduce over inclusion of bsd.port.mk	2014-01-15 22:50:18 +00:00
fasta3	Mark as broken: Invalid checksum, seems like the software was rerolled	2014-01-03 19:46:05 +00:00
fastdnaml
finchtv	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic
grappa
hmmer	Stage support	2013-12-30 18:08:14 +00:00
iolib
jalview
lagan
lamarc	- rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk	2013-12-30 20:55:18 +00:00
libgenome
libsbml	Reduce over inclusion of bsd.port.mk	2014-01-15 22:50:50 +00:00
linux-foldingathome
mafft	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
mapm3	- Fix build with clang	2014-01-12 19:07:28 +00:00
migrate
molden
mopac
mrbayes
mummer	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
muscle
ncbi-toolkit
njplot	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene	- add stage support	2014-01-06 09:57:19 +00:00
p5-Bio-Das	- support stage	2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite	- support stage	2014-01-05 12:07:20 +00:00
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo	- support stage	2014-01-05 12:07:20 +00:00
p5-Bio-SCF	- add stage support	2014-01-06 09:44:19 +00:00
p5-bioperl	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
p5-bioperl-run	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
paml	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
phd2fasta	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
phrap	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
phred	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
phylip
phyml
platon
plink
plinkseq
povchem
primer3
protomol	Reduce over inclusion of bsd.port.mk	2014-01-15 22:51:26 +00:00
psi88
py-biopython	Python cleanup:	2014-01-13 21:00:02 +00:00
pycogent
pyfasta	Python cleanup:	2014-01-13 21:00:02 +00:00
pymol
python-nexus
rasmol
recombine
ruby-bio	Reduce over inclusion of bsd.port.mk	2014-01-15 22:52:28 +00:00
seaview
seqan
seqio
seqtools
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx	Stage support	2013-12-30 18:27:32 +00:00
tRNAscan-SE
ugene	- Update to version 1.13.0 and improve FreeBSD support; it also builds	2014-01-16 17:17:15 +00:00
velvet	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
wise
xmolwt
Makefile