| .. |
|
adun
|
LICENSE GPLv2
|
2010-06-05 19:53:32 +00:00 |
|
ariadne
|
|
|
|
artemis
|
|
|
|
avida
|
Mark various ports as broken or ignore on powerpc.
|
2010-04-01 05:16:19 +00:00 |
|
babel
|
Mark various ports as broken or ignore on powerpc.
|
2010-04-01 05:16:19 +00:00 |
|
belvu
|
|
|
|
biococoa
|
LICENSE LGPL21
|
2010-06-05 06:14:28 +00:00 |
|
biojava
|
|
|
|
blast
|
- SUB_FILES += pkg-message
|
2010-01-09 23:51:26 +00:00 |
|
blat
|
|
|
|
boinc-simap
|
- Update the libmap instructions for amd64/8
|
2010-07-29 08:30:24 +00:00 |
|
chemeq
|
|
|
|
clustalw
|
- Fix fetch error
|
2009-12-27 03:05:03 +00:00 |
|
consed
|
|
|
|
crimap
|
- actually remove old patch
|
2010-01-17 00:16:34 +00:00 |
|
crux
|
Update to Crux 1.2.0.
|
2009-09-19 17:58:13 +00:00 |
|
distribfold
|
|
|
|
dna-qc
|
BROKEN should not be quoted.
|
2010-06-13 08:40:06 +00:00 |
|
dotter
|
- Removed BROKEN because file fetches and checksums correctly
|
2010-04-28 22:37:11 +00:00 |
|
embassy
|
- Update to 6.2.0
|
2010-04-07 01:21:36 +00:00 |
|
emboss
|
- Update to 6.2.0
|
2010-04-07 01:21:36 +00:00 |
|
fasta
|
Mark various ports as broken or ignore on powerpc.
|
2010-04-01 05:16:19 +00:00 |
|
fasta3
|
Update to 35.4.9
|
2009-08-23 15:47:37 +00:00 |
|
fastdnaml
|
|
|
|
finchtv
|
|
|
|
fluctuate
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
garlic
|
|
|
|
genpak
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
gff2ps
|
|
|
|
gmap
|
|
|
|
gperiodic
|
Bounce PORTREVISION for gettext-related ports. Have fun, ya'll.
|
2010-05-31 02:01:56 +00:00 |
|
grappa
|
|
|
|
hmmer
|
|
|
|
iolib
|
- Update to 1.12.2
|
2010-05-21 06:19:18 +00:00 |
|
jalview
|
|
|
|
kinemage
|
|
|
|
L-Breeder
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
lagan
|
|
|
|
lamarc
|
- Reset more ports I don't use anymore
|
2010-02-10 21:47:48 +00:00 |
|
libgenome
|
-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
|
2009-08-02 19:36:34 +00:00 |
|
libsbml
|
- Update to 4.0.1
|
2010-05-24 07:19:35 +00:00 |
|
linux-foldingathome
|
|
|
|
lsysexp
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
mafft
|
|
|
|
mapm3
|
- Mark MAKE_JOBS_UNSAFE
|
2009-11-20 22:53:09 +00:00 |
|
migrate
|
- Update to 3.1.6
|
2010-05-30 23:46:55 +00:00 |
|
molden
|
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
|
2009-09-13 00:08:01 +00:00 |
|
mopac
|
- Update to 7.1.11
|
2009-12-22 11:25:15 +00:00 |
|
mrbayes
|
|
|
|
mummer
|
- Update to 3.22
|
2010-03-21 17:18:20 +00:00 |
|
muscle
|
|
|
|
ncbi-toolkit
|
- use $SUB_FILES to dynamically adjust pkg-message
|
2010-01-31 03:42:20 +00:00 |
|
njplot
|
Convert most of remaining ports that depend on xorg-libraries to
|
2009-06-09 15:33:28 +00:00 |
|
ortep3
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
p5-AcePerl
|
- Remove unneeded dependencies which is in perl-5.8.9 dist
|
2010-01-29 14:52:21 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
|
|
|
p5-Bio-Das
|
- Update to 1.17
|
2010-06-30 07:36:25 +00:00 |
|
p5-Bio-Das-Lite
|
- Update to 2.04
|
2010-06-22 03:28:49 +00:00 |
|
p5-Bio-Glite
|
- Remove unneeded dependencies which is in perl-5.8.9 dist
|
2010-01-29 14:52:21 +00:00 |
|
p5-Bio-Graphics
|
- Update to 2.11
|
2010-06-30 07:41:06 +00:00 |
|
p5-Bio-MAGETAB
|
Update to 1.10.
|
2010-06-10 16:56:04 +00:00 |
|
p5-Bio-NEXUS
|
Bio::NEXUS package provides an object-oriented, Perl-based
|
2009-08-22 20:39:51 +00:00 |
|
p5-Bio-Phylo
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
p5-Bio-SCF
|
- Update to 1.03
|
2010-01-09 01:21:21 +00:00 |
|
p5-bioperl
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
p5-bioperl-run
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
paml
|
- Update to 4.4a
|
2010-04-20 08:42:04 +00:00 |
|
phd2fasta
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
phyml
|
PhyML is a software that estimates maximum likelihood phylogenies from
|
2009-07-21 01:10:13 +00:00 |
|
platon
|
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
|
2009-09-13 00:08:01 +00:00 |
|
povchem
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
primer3
|
- Update to 1.1.4
|
2009-12-18 02:55:57 +00:00 |
|
protomol
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
psi88
|
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
|
2009-09-13 00:08:01 +00:00 |
|
py-biopython
|
- Update to 1.54
|
2010-07-02 02:57:19 +00:00 |
|
pycogent
|
- Update to 1.4.1
|
2010-06-01 06:57:30 +00:00 |
|
pyfasta
|
- Update to 0.3.9
|
2010-03-19 08:32:48 +00:00 |
|
pymol
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
python-nexus
|
- Update to 0.7
|
2010-02-24 01:30:46 +00:00 |
|
rasmol
|
Convert most of remaining ports that depend on xorg-libraries to
|
2009-06-09 15:33:28 +00:00 |
|
recombine
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
ruby-bio
|
- Update to 1.4.0
|
2010-06-08 00:18:54 +00:00 |
|
seaview
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
seqio
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
sim4
|
|
|
|
ssaha
|
|
|
|
t_coffee
|
|
|
|
tinker
|
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
|
2009-09-13 00:08:01 +00:00 |
|
treepuzzle
|
|
|
|
treeviewx
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
tRNAscan-SE
|
|
|
|
velvet
|
Velvet is a de novo genomic assembler specially designed for short read
|
2009-11-07 01:23:59 +00:00 |
|
wise
|
- SBU_FILES += pkg-message
|
2010-01-08 01:30:20 +00:00 |
|
xdrawchem
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
xmolwt
|
|
|
|
Makefile
|
p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XML
|
2010-03-01 09:16:25 +00:00 |
