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freebsd-ports/biology
History
Erwin Lansing 9f3d7499d2 Fix PKGORIGIN 
Submitted by:	pointyhat
2009-08-08 13:26:13 +00:00
..
adun
- fix PORTSCOUT
2009-07-06 07:29:12 +00:00
ariadne
…
artemis
…
avida
bump PORTREVISION after cmake update
2009-03-24 19:13:32 +00:00
babel
…
belvu
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biococoa
- add LICENSE:
2009-01-16 16:01:05 +00:00
biojava
- Update to 1.7
2009-05-01 09:33:42 +00:00
blast
- Remove conditional checks relevant only on FreeBSD 5.x and older
2009-01-05 17:27:29 +00:00
blat
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boinc-simap
- Remove conditional checks relevant only on FreeBSD 5.x and older
2009-01-05 17:27:29 +00:00
chemeq
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clustalw
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consed
Welcome to the new linux ports infrastructure which allows using
2009-03-19 17:28:51 +00:00
crimap
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crux
Fix PKGORIGIN
2009-08-08 13:26:13 +00:00
distribfold
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dna-qc
…
dotter
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embassy
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
emboss
-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
2009-08-02 19:36:34 +00:00
fasta
- Update download location
2009-01-31 22:45:38 +00:00
fasta3
- Update to 35.4.7 [1]
2009-06-09 07:53:37 +00:00
fastdnaml
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finchtv
…
fluctuate
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garlic
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genpak
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
gff2ps
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gmap
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
2008-08-21 06:18:49 +00:00
gperiodic
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
grappa
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hmmer
- Update download locations, update WWW
2009-02-01 08:17:14 +00:00
jalview
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kinemage
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L-Breeder
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
lagan
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lamarc
- Mark most of my ports MAKE_JOBS_SAFE=yes
2009-05-16 06:27:56 +00:00
libgenome
-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
2009-08-02 19:36:34 +00:00
libsbml
LibSBML is an open-source programming library to help you read, write,
2009-05-28 23:36:10 +00:00
linux-foldingathome
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lsysexp
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
mafft
- Update download locations, update WWW
2009-02-04 03:31:00 +00:00
mapm3
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migrate
- Update to 3.0.3
2009-01-14 16:00:34 +00:00
molden
- Unbreak fetch
2009-08-02 19:59:03 +00:00
mopac
Add -lf2c, this is the correct dependency. Bump portrevision.
2008-08-22 22:20:05 +00:00
mrbayes
Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from
2009-05-12 11:28:17 +00:00
mummer
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muscle
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ncbi-toolkit
- Update to 2009.03.01
2009-03-28 16:59:39 +00:00
njplot
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
ortep3
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
2009-01-07 16:34:27 +00:00
p5-AcePerl
- Flip MAKE_JOBS_SAFE to MAKE_JOBS_UNSAFE
2009-07-07 22:11:07 +00:00
p5-Bio-ASN1-EntrezGene
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p5-Bio-Das
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
p5-Bio-Glite
Bio::Glite is an interface to G-language Genome Analysis Environment
2009-04-02 18:24:59 +00:00
p5-Bio-Graphics
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
p5-Bio-MAGETAB
Utilize %%SITE_PERL%% and %%PERL_ARCH%% in pkg-plists
2009-07-30 23:04:49 +00:00
p5-Bio-Phylo
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
p5-bioperl
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
p5-bioperl-run
- Relax check on bioperl version; people keep forgetting to update this check
2009-08-02 20:00:08 +00:00
paml
- Update to 4.2b
2009-03-02 19:02:48 +00:00
phd2fasta
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phrap
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phred
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phylip
- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
2009-01-23 16:28:36 +00:00
phyml
PhyML is a software that estimates maximum likelihood phylogenies from
2009-07-21 01:10:13 +00:00
platon
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
2009-01-07 16:34:27 +00:00
povchem
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primer3
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protomol
- update to jpeg7
2009-07-18 11:11:29 +00:00
psi88
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
2009-01-07 16:34:27 +00:00
py-biopython
- Update to 1.48
2008-10-11 15:26:33 +00:00
pycogent
PyCogent is a software library for genomic biology. It is a fully integrated
2009-06-22 12:46:56 +00:00
pymol
- Update lang/python26 and make Python 2.6.2 to the default Python version
2009-06-08 22:30:55 +00:00
rasmol
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
recombine
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ruby-bio
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seaview
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
seqio
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sim4
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ssaha
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t_coffee
- Respect PORTDOCS/PORTEXAMPLES
2008-09-09 13:43:15 +00:00
tinker
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
2009-01-07 16:34:27 +00:00
treepuzzle
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
2008-08-21 06:18:49 +00:00
treeviewx
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
tRNAscan-SE
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wise
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xdrawchem
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
xmolwt
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Makefile
PhyML is a software that estimates maximum likelihood phylogenies from
2009-07-21 01:10:13 +00:00