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freebsd-ports/biology
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Philip M. Gollucci c10f314307 - lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks 
PR:             ports/135398
Tested by:      2 -exp runs by pav
Approved by:    portmgr (pav)
2009-07-22 16:27:08 +00:00
..
adun
- fix PORTSCOUT
2009-07-06 07:29:12 +00:00
ariadne
…
artemis
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
avida
bump PORTREVISION after cmake update
2009-03-24 19:13:32 +00:00
babel
…
belvu
…
biococoa
- add LICENSE:
2009-01-16 16:01:05 +00:00
biojava
- Update to 1.7
2009-05-01 09:33:42 +00:00
blast
- Remove conditional checks relevant only on FreeBSD 5.x and older
2009-01-05 17:27:29 +00:00
blat
- Remove USE_GCC where it can be satisfied with base compiler on following
2008-07-25 14:34:52 +00:00
boinc-simap
- Remove conditional checks relevant only on FreeBSD 5.x and older
2009-01-05 17:27:29 +00:00
chemeq
…
clustalw
…
consed
Welcome to the new linux ports infrastructure which allows using
2009-03-19 17:28:51 +00:00
crimap
…
crux
Update to Crux 1.1.0.
2009-06-21 06:18:51 +00:00
distribfold
…
dna-qc
…
dotter
…
embassy
- Update to 6.0.0
2009-06-16 22:42:34 +00:00
emboss
- Update to 0.1.24
2009-03-14 15:17:06 +00:00
fasta
- Update download location
2009-01-31 22:45:38 +00:00
fasta3
- Update to 35.4.7 [1]
2009-06-09 07:53:37 +00:00
fastdnaml
…
finchtv
…
fluctuate
…
garlic
…
genpak
- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV
2008-07-25 09:08:42 +00:00
gff2ps
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
gmap
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
2008-08-21 06:18:49 +00:00
gperiodic
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
grappa
…
hmmer
- Update download locations, update WWW
2009-02-01 08:17:14 +00:00
jalview
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
kinemage
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L-Breeder
Reset dyeske@gmail.com at his request.
2009-02-02 23:44:01 +00:00
lagan
- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV
2008-07-25 09:08:42 +00:00
lamarc
- Mark most of my ports MAKE_JOBS_SAFE=yes
2009-05-16 06:27:56 +00:00
libgenome
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
2008-08-21 06:18:49 +00:00
libsbml
LibSBML is an open-source programming library to help you read, write,
2009-05-28 23:36:10 +00:00
linux-foldingathome
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lsysexp
Reset dyeske@gmail.com at his request.
2009-02-02 23:44:01 +00:00
mafft
- Update download locations, update WWW
2009-02-04 03:31:00 +00:00
mapm3
…
migrate
- Update to 3.0.3
2009-01-14 16:00:34 +00:00
molden
- Unbreak distinfo after portrevision bump
2009-01-09 19:31:49 +00:00
mopac
Add -lf2c, this is the correct dependency. Bump portrevision.
2008-08-22 22:20:05 +00:00
mrbayes
Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from
2009-05-12 11:28:17 +00:00
mummer
…
muscle
…
ncbi-toolkit
- Update to 2009.03.01
2009-03-28 16:59:39 +00:00
njplot
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
ortep3
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
2009-01-07 16:34:27 +00:00
p5-AcePerl
- Flip MAKE_JOBS_SAFE to MAKE_JOBS_UNSAFE
2009-07-07 22:11:07 +00:00
p5-Bio-ASN1-EntrezGene
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p5-Bio-Das
- lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks
2009-07-22 16:27:08 +00:00
p5-Bio-Glite
Bio::Glite is an interface to G-language Genome Analysis Environment
2009-04-02 18:24:59 +00:00
p5-Bio-Graphics
- Update to 1.97
2009-07-05 22:24:00 +00:00
p5-Bio-MAGETAB
p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This
2009-07-01 09:03:28 +00:00
p5-Bio-Phylo
…
p5-bioperl
- lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks
2009-07-22 16:27:08 +00:00
p5-bioperl-run
- Update to 1.6.1
2009-03-19 20:54:05 +00:00
paml
- Update to 4.2b
2009-03-02 19:02:48 +00:00
phd2fasta
Teach the building cluster that these ports are not to be build
2008-05-25 23:05:10 +00:00
phrap
Teach the building cluster that these ports are not to be build
2008-05-25 23:05:10 +00:00
phred
Teach the building cluster that these ports are not to be build
2008-05-25 23:05:10 +00:00
phylip
- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
2009-01-23 16:28:36 +00:00
phyml
PhyML is a software that estimates maximum likelihood phylogenies from
2009-07-21 01:10:13 +00:00
platon
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
2009-01-07 16:34:27 +00:00
povchem
…
primer3
…
protomol
- update to jpeg7
2009-07-18 11:11:29 +00:00
psi88
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
2009-01-07 16:34:27 +00:00
py-biopython
- Update to 1.48
2008-10-11 15:26:33 +00:00
pycogent
PyCogent is a software library for genomic biology. It is a fully integrated
2009-06-22 12:46:56 +00:00
pymol
- Update lang/python26 and make Python 2.6.2 to the default Python version
2009-06-08 22:30:55 +00:00
rasmol
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
recombine
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ruby-bio
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seaview
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seqio
- respect NOPORTEXAMPLES/NOPORTDOCS and fix plist
2008-07-12 06:28:25 +00:00
sim4
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ssaha
- Fix plist files installation.
2008-06-21 02:46:21 +00:00
t_coffee
- Respect PORTDOCS/PORTEXAMPLES
2008-09-09 13:43:15 +00:00
tinker
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
2009-01-07 16:34:27 +00:00
treepuzzle
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
2008-08-21 06:18:49 +00:00
treeviewx
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
tRNAscan-SE
- Update MASTER_SITES and WWW: line
2008-05-22 00:49:42 +00:00
wise
…
xdrawchem
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
2008-08-21 06:18:49 +00:00
xmolwt
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
Makefile
PhyML is a software that estimates maximum likelihood phylogenies from
2009-07-21 01:10:13 +00:00