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freebsd-ports/biology
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Martin Wilke 5da99a81fe p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This 
is a beta release. All functions have now been implemented and most
have test suites; the exceptions include the modules involved in
export of MAGE-TAB documents, which are still a little experimental in
nature. The API is mostly finalised (and fully documented), but some
details may yet change where necessary to improve usability.

WWW: http://search.cpan.org/dist/Bio-MAGETAB/

PR:		ports/136021
Submitted by:	Wen Heping <wenheping at gmail.com>
2009-07-01 09:03:28 +00:00
..
adun
- fix build for custom LOCALBASE in UL subdir
2009-06-02 02:33:05 +00:00
ariadne
…
artemis
…
avida
bump PORTREVISION after cmake update
2009-03-24 19:13:32 +00:00
babel
…
belvu
…
biococoa
- add LICENSE:
2009-01-16 16:01:05 +00:00
biojava
- Update to 1.7
2009-05-01 09:33:42 +00:00
blast
…
blat
…
boinc-simap
…
chemeq
…
clustalw
…
consed
Welcome to the new linux ports infrastructure which allows using
2009-03-19 17:28:51 +00:00
crimap
…
crux
Update to Crux 1.1.0.
2009-06-21 06:18:51 +00:00
distribfold
…
dna-qc
…
dotter
…
embassy
- Update to 6.0.0
2009-06-16 22:42:34 +00:00
emboss
- Update to 0.1.24
2009-03-14 15:17:06 +00:00
fasta
- Update download location
2009-01-31 22:45:38 +00:00
fasta3
- Update to 35.4.7 [1]
2009-06-09 07:53:37 +00:00
fastdnaml
…
finchtv
…
fluctuate
…
garlic
…
genpak
…
gff2ps
…
gmap
…
gperiodic
…
grappa
…
hmmer
- Update download locations, update WWW
2009-02-01 08:17:14 +00:00
jalview
…
kinemage
…
L-Breeder
Reset dyeske@gmail.com at his request.
2009-02-02 23:44:01 +00:00
lagan
…
lamarc
- Mark most of my ports MAKE_JOBS_SAFE=yes
2009-05-16 06:27:56 +00:00
libgenome
…
libsbml
LibSBML is an open-source programming library to help you read, write,
2009-05-28 23:36:10 +00:00
linux-foldingathome
…
lsysexp
Reset dyeske@gmail.com at his request.
2009-02-02 23:44:01 +00:00
mafft
- Update download locations, update WWW
2009-02-04 03:31:00 +00:00
mapm3
…
migrate
- Update to 3.0.3
2009-01-14 16:00:34 +00:00
molden
…
mopac
…
mrbayes
Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from
2009-05-12 11:28:17 +00:00
mummer
…
muscle
…
ncbi-toolkit
- Update to 2009.03.01
2009-03-28 16:59:39 +00:00
njplot
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
ortep3
…
p5-AcePerl
- Mark most of my ports MAKE_JOBS_SAFE=yes
2009-05-16 06:27:56 +00:00
p5-Bio-ASN1-EntrezGene
…
p5-Bio-Das
- Update to 1.11
2009-06-08 09:30:07 +00:00
p5-Bio-Glite
Bio::Glite is an interface to G-language Genome Analysis Environment
2009-04-02 18:24:59 +00:00
p5-Bio-Graphics
- Update to 1.95
2009-06-02 21:34:06 +00:00
p5-Bio-MAGETAB
p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This
2009-07-01 09:03:28 +00:00
p5-Bio-Phylo
…
p5-bioperl
Remove variable PERL_VER from the ports tree at all - because
2009-03-05 17:56:24 +00:00
p5-bioperl-run
- Update to 1.6.1
2009-03-19 20:54:05 +00:00
paml
- Update to 4.2b
2009-03-02 19:02:48 +00:00
phd2fasta
…
phrap
…
phred
…
phylip
- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
2009-01-23 16:28:36 +00:00
platon
…
povchem
…
primer3
…
protomol
- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
2009-01-23 16:28:36 +00:00
psi88
…
py-biopython
…
pycogent
PyCogent is a software library for genomic biology. It is a fully integrated
2009-06-22 12:46:56 +00:00
pymol
- Update lang/python26 and make Python 2.6.2 to the default Python version
2009-06-08 22:30:55 +00:00
rasmol
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
recombine
…
ruby-bio
…
seaview
…
seqio
…
sim4
…
ssaha
…
t_coffee
…
tinker
…
treepuzzle
…
treeviewx
…
tRNAscan-SE
…
wise
…
xdrawchem
…
xmolwt
…
Makefile
p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This
2009-07-01 09:03:28 +00:00