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freebsd-ports/biology
History
Rene Ladan 8b3c8800eb Remove expired ports: 
2014-04-16 ports-mgmt/pkgsearch: Upstream disappeared
2014-04-17 science/flounder: Unmaintained since 2002
2014-04-17 security/nbaudit: Unmaintained since 2002
2014-04-17 security/saint: Unmaintained since 2002
2014-04-17 graphics/gozer: Unmaintained since 2002
2014-04-17 misc/pdfmap: Unmaintained since 2002
2014-04-17 devel/showgrammar: Unmaintained since 2002
2014-04-17 biology/libgenome: Unmaintained since 2002
2014-04-17 deskutils/narval: Unmaintained since 2002
2014-04-17 devel/fampp: Unmaintained since 2002
2014-04-17 net-p2p/py-fngrab: Unmaintained since 2002
2014-04-17 misc/wmfirew: Unmaintained since 2002
2014-04-17 x11-wm/e16utils: Unmaintained since 2002
2014-04-17 misc/salias: Unmaintained since 2002
2014-04-17 print/latex2slides: Unmaintained since 2002
2014-04-17 lang/sxm: Unmaintained since 2002
2014-04-17 textproc/pybook: Unmaintained since 2002
2014-04-17 mail/mailcrypt: Unmaintained since 2002
2014-04-17 japanese/elvis: Unmaintained since 2002
2014-04-17 devel/prototype: Unmaintained since 2002
2014-04-17 print/wprint: Unmaintained since 2002
2014-04-17 science/euler: Unmaintained since 2002
2014-04-17 multimedia/gopchop: Unmaintained since 2002
2014-04-17 science/gdis: Unmaintained since 2002
2014-04-17 net/googolplex: Unmaintained since 2002
2014-04-17 lang/logo: Unmaintained since 2002
2014-04-17 textproc/roap: Unmaintained since 2002
2014-04-17 x11-wm/afterstep-i18n: Unmaintained since 2002
2014-04-17 games/yamsweeper: Unmaintained since 2002
2014-04-17 net-mgmt/echolot: Unmaintained since 2002
2014-04-17 security/pam_smb: Unmaintained since 2002
2014-04-18 devel/lua-redis-parser: Broken for more than 6 months
2014-04-18 biology/finchtv: Broken for more than 6 months
2014-04-18 net-im/ari-yahoo: Broken for more than 1 year (http://www.icculus.org/ari-yahoo/)
2014-04-18 11:17:45 +00:00
..
ariadne
Stage support
2013-11-12 21:54:36 +00:00
artemis
Support stage
2014-01-20 23:06:48 +00:00
avida
- Fix build with clang
2013-11-27 16:07:51 +00:00
babel
Support stage
2014-01-15 22:44:13 +00:00
biococoa
Update BioCocoa to the latest release.
2013-10-08 18:34:45 +00:00
biojava
Unbreak
2014-03-08 16:39:01 +00:00
blast
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
blat
Convert b* to USES=zip
2014-03-07 15:52:40 +00:00
boinc-simap
Drop maintainership BOINC ports, old machine running them gave up.
2014-02-04 17:54:29 +00:00
chemeq
Stage support
2014-01-18 15:55:42 +00:00
clustalw
- Fix build with clang/libc++.
2013-12-20 15:29:07 +00:00
consed
Remove trailing whitespaces from category biology
2014-02-21 13:35:26 +00:00
crux
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
embassy
Reduce over inclusion of bsd.port.mk
2014-01-15 22:48:32 +00:00
emboss
In preparation for making libtool generate libraries with a sane name, fix all
2013-12-11 14:43:51 +00:00
fasta
- Add staging support
2014-03-24 09:01:39 +00:00
fasta3
biology/fasta3: Checked new distfile and regenerated distinfo to unbreak
2014-03-02 10:58:50 +00:00
fastdnaml
Support staging
2014-02-16 11:32:43 +00:00
fluctuate
Support staging
2014-02-16 11:35:00 +00:00
garlic
- Convert USE_GMAKE to USES
2014-03-13 07:41:34 +00:00
gff2ps
Add staging support
2014-03-23 17:43:41 +00:00
gmap
Support stage
2013-12-10 17:21:46 +00:00
gperiodic
Add staging support
2014-03-23 18:09:23 +00:00
grappa
- Respect CC/CFLAGS
2013-12-20 13:27:13 +00:00
hmmer
Stage support
2013-12-30 18:08:14 +00:00
iolib
- Back to the heap, I don't use this port anymore
2014-04-12 07:42:33 +00:00
jalview
Fix properties on pkg-plist
2014-01-21 23:18:05 +00:00
lagan
- Fix build
2013-11-27 13:16:47 +00:00
lamarc
- rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk
2013-12-30 20:55:18 +00:00
libsbml
The FreeBSD x11@ and graphics team proudly presents
2014-04-16 18:28:47 +00:00
linux-foldingathome
Add NO_STAGE all over the place in preparation for the staging support (cat: biology)
2013-09-20 15:55:44 +00:00
mafft
- Convert USE_GMAKE to USES
2014-03-13 07:41:34 +00:00
mapm3
- Fix build with clang
2014-01-12 19:07:28 +00:00
migrate
- Stagify; cleanup Makefile and reorder the knobs a bit
2014-01-29 12:08:29 +00:00
molden
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
mopac
- Add staging support
2014-03-23 18:10:41 +00:00
mrbayes
Support stage
2013-12-10 17:54:12 +00:00
mummer
- Convert USE_GMAKE to USES
2014-03-13 07:41:34 +00:00
muscle
- Convert USE_GMAKE to USES
2014-03-13 07:41:34 +00:00
ncbi-toolkit
Add staging support
2014-03-23 20:50:54 +00:00
njplot
Remove trailing whitespaces from category biology
2014-02-21 13:35:26 +00:00
ortep3
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
p5-AcePerl
- Stage support
2014-02-10 06:56:52 +00:00
p5-Bio-ASN1-EntrezGene
- add stage support
2014-01-06 09:57:19 +00:00
p5-Bio-Das
- support stage
2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite
- fix pkg-plist
2014-01-30 07:34:25 +00:00
p5-Bio-GFF3
- Fix PLIST
2014-03-26 14:23:09 +00:00
p5-Bio-Glite
- support stage
2014-01-05 12:07:20 +00:00
p5-Bio-Graphics
Mark as broken unstaged perl ports
2014-04-09 09:49:02 +00:00
p5-Bio-MAGETAB
- Update to 1.28
2013-11-28 15:05:08 +00:00
p5-Bio-NEXUS
- Stage support
2014-01-31 12:47:06 +00:00
p5-Bio-Phylo
- support stage
2014-01-05 12:07:20 +00:00
p5-Bio-SCF
- add stage support
2014-01-06 09:44:19 +00:00
p5-bioperl
Mark as broken unstaged perl ports
2014-04-09 09:49:02 +00:00
p5-bioperl-run
Remove trailing whitespaces from category biology
2014-02-21 13:35:26 +00:00
paml
- Update to 4.8
2014-04-05 10:56:52 +00:00
phd2fasta
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
phrap
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
phred
Convert biology to MDOCS and MEXAMPLES
2014-01-03 15:46:52 +00:00
phylip
The FreeBSD x11@ and graphics team proudly presents
2014-04-16 18:28:47 +00:00
phyml
- Stage support
2014-01-31 12:32:55 +00:00
platon
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
plink
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
plinkseq
Convert to dos2unix
2014-03-07 11:37:35 +00:00
povchem
Convert to USES=dos2unix
2013-11-18 13:45:44 +00:00
primer3
- Update to 2.3.6
2014-04-06 03:56:03 +00:00
protomol
The FreeBSD x11@ and graphics team proudly presents
2014-04-16 18:28:47 +00:00
psi88
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-biopython
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
pycogent
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
pyfasta
- Update to 0.5.2
2014-04-06 04:05:43 +00:00
pymol
The FreeBSD x11@ and graphics team proudly presents
2014-04-16 18:28:47 +00:00
python-nexus
- Convert to PYDISTUTILS_AUTOPLIST
2014-01-31 12:30:39 +00:00
recombine
- Support staging
2014-02-16 11:39:42 +00:00
ruby-bio
Support stage
2014-04-07 13:01:26 +00:00
seaview
- Stage support
2014-02-27 08:46:42 +00:00
seqan
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
seqio
Support staging
2014-02-16 11:42:09 +00:00
seqtools
Fix old makeplist bug.
2014-02-12 14:03:25 +00:00
sim4
Support staging
2014-02-16 11:43:07 +00:00
ssaha
biology/ssaha: undeprecate, this port fetches and builds fine.
2014-03-09 09:39:50 +00:00
t_coffee
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
tinker
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
treepuzzle
- Remove NO_STAGE as these have been tested to be safe
2013-09-25 00:54:08 +00:00
treeviewx
Unbreak
2014-03-28 00:08:03 +00:00
tRNAscan-SE
biology/tRNAscan-SE: Fix hardcoded perl path
2014-02-05 23:44:50 +00:00
ugene
Update to version 1.13.1.
2014-03-07 07:39:20 +00:00
velvet
- Convert USE_GMAKE to USES
2014-03-13 07:41:34 +00:00
wise
- Add staging support
2014-03-24 10:46:35 +00:00
xmolwt
Add staging support
2014-03-24 11:06:56 +00:00
Makefile
Remove expired ports:
2014-04-18 11:17:45 +00:00