Add a script to bisect org-mode source to find the line that breaks the compare.

scripts/run_docker_compare_bisect.bash

@@ -0,0 +1,93 @@
+#!/usr/bin/env bash
+#
+# Bisect parsing a file at various line cut-off points to see which line causes the parse to differ from emacs.
+set -euo pipefail
+IFS=$'\n\t'
+DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
+
+cd "$DIR/../"
+REALPATH=$(command -v uu-realpath || command -v realpath)
+
+############## Setup #########################
+
+function cleanup {
+    for f in "${folders[@]}"; do
+        log "Deleting $f"
+        rm -rf "$f"
+    done
+}
+folders=()
+for sig in EXIT INT QUIT HUP TERM; do
+  trap "set +e; cleanup" "$sig"
+done
+
+function die {
+    local status_code="$1"
+    shift
+    (>&2 echo "${@}")
+    exit "$status_code"
+}
+
+function log {
+    (>&2 echo "${@}")
+}
+
+############## Program #########################
+
+function main {
+    log "Is is recommended that the output of \`mktemp -d -t 'compare_bisect.XXXXXXXX'\` is inside a tmpfs filesystem since this script will make many writes to these folders."
+
+    local target_full_path=$($REALPATH "$1")
+    SOURCE_FOLDER=$(dirname "$target_full_path")
+    TARGET_DOCUMENT=$(basename "$target_full_path")
+
+
+    local good=0
+    local bad=$(wc -l "$SOURCE_FOLDER/$TARGET_DOCUMENT" | awk '{print $1}')
+
+    set +e
+    run_parse "$bad" &> /dev/null
+    local status=$?
+    set -e
+    if [ $status -eq 0 ]; then
+        log "Entire file passes."
+        exit 0
+    fi
+
+    while [[ "$((bad - good))" -gt 1 ]]; do
+        local next_line=$((((bad - good) / 2) + good))
+        log "Testing line $next_line"
+        set +e
+        run_parse "$next_line" &> /dev/null
+        local status=$?
+        set -e
+        if [ $status -eq 0 ]; then
+            good="$next_line"
+            log "Line $next_line good"
+        else
+            bad="$next_line"
+            log "Line $next_line bad"
+        fi
+    done
+    echo "Bad line: $bad"
+}
+
+function setup_temp_dir {
+    local temp_dir=$(mktemp -d -t 'compare_bisect.XXXXXXXX')
+    cp -r "$SOURCE_FOLDER/"* "$temp_dir/"
+    echo "$temp_dir"
+}
+
+function run_parse {
+    local lines="$1"
+    local temp_dir=$(setup_temp_dir)
+    folders+=("$temp_dir")
+    cat "$SOURCE_FOLDER/$TARGET_DOCUMENT" | head -n "$lines" > "$temp_dir/$TARGET_DOCUMENT"
+    "${DIR}/run_docker_compare.bash" "$temp_dir/$TARGET_DOCUMENT"
+    local status=$?
+    rm -rf "$temp_dir"
+    # TODO: Remove temp_dir from folders
+    return "$status"
+}
+
+main "${@}"