2010-05-10 13:14:39 +00:00
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bin/mcmc-jags
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2004-05-27 15:18:45 +00:00
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include/JAGS/Console.h
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2009-01-19 01:19:07 +00:00
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include/JAGS/JRmath.h
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include/JAGS/Module.h
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2005-11-09 11:16:04 +00:00
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include/JAGS/compiler/Compiler.h
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include/JAGS/compiler/ConstantFactory.h
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include/JAGS/compiler/Counter.h
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include/JAGS/compiler/CounterTab.h
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include/JAGS/compiler/LogicalFactory.h
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include/JAGS/compiler/MixtureFactory.h
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include/JAGS/compiler/NodeFactory.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/compiler/ObsFuncTab.h
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2005-11-09 11:16:04 +00:00
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include/JAGS/compiler/ParseTree.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/distribution/ArrayDist.h
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include/JAGS/distribution/DistPtr.h
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2009-01-19 01:19:07 +00:00
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include/JAGS/distribution/DistTab.h
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include/JAGS/distribution/Distribution.h
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include/JAGS/distribution/RNG.h
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include/JAGS/distribution/RNGFactory.h
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include/JAGS/distribution/RmathRNG.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/distribution/ScalarDist.h
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include/JAGS/distribution/TruncatedNormal.h
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include/JAGS/distribution/VectorDist.h
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include/JAGS/function/ArrayFunction.h
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2009-01-19 01:19:07 +00:00
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include/JAGS/function/FuncTab.h
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include/JAGS/function/Function.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/function/FunctionPtr.h
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include/JAGS/function/LinkFunction.h
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include/JAGS/function/ScalarFunction.h
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include/JAGS/function/VectorFunction.h
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2004-05-27 15:18:45 +00:00
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include/JAGS/graph/AggNode.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/graph/ArrayLogicalNode.h
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include/JAGS/graph/ArrayStochasticNode.h
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2004-05-27 15:18:45 +00:00
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include/JAGS/graph/ConstantNode.h
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include/JAGS/graph/DeterministicNode.h
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include/JAGS/graph/Graph.h
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include/JAGS/graph/GraphMarks.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/graph/LinkNode.h
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2004-05-27 15:18:45 +00:00
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include/JAGS/graph/LogicalNode.h
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include/JAGS/graph/MixtureNode.h
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include/JAGS/graph/Node.h
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include/JAGS/graph/NodeError.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/graph/ScalarLogicalNode.h
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include/JAGS/graph/ScalarStochasticNode.h
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2004-05-27 15:18:45 +00:00
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include/JAGS/graph/StochasticNode.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/graph/VSLogicalNode.h
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include/JAGS/graph/VectorLogicalNode.h
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include/JAGS/graph/VectorStochasticNode.h
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2005-11-09 11:16:04 +00:00
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include/JAGS/model/BUGSModel.h
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2004-05-27 15:18:45 +00:00
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include/JAGS/model/Model.h
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2009-01-19 01:19:07 +00:00
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include/JAGS/model/Monitor.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/model/MonitorControl.h
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2009-01-19 01:19:07 +00:00
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include/JAGS/model/MonitorFactory.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/model/MonitorInfo.h
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2004-05-27 15:18:45 +00:00
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include/JAGS/model/NodeArray.h
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include/JAGS/model/SymTab.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/sampler/GraphView.h
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2009-01-19 01:19:07 +00:00
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include/JAGS/sampler/Linear.h
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include/JAGS/sampler/Metropolis.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/sampler/ParallelSampler.h
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2009-01-19 01:19:07 +00:00
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include/JAGS/sampler/RWMetropolis.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/sampler/SampleMethod.h
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2004-05-27 15:18:45 +00:00
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include/JAGS/sampler/Sampler.h
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include/JAGS/sampler/SamplerFactory.h
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2009-01-19 01:19:07 +00:00
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include/JAGS/sampler/SingletonFactory.h
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2005-11-09 11:16:04 +00:00
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include/JAGS/sampler/Slicer.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/sampler/StepAdapter.h
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include/JAGS/sampler/TemperedMetropolis.h
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2004-05-27 15:18:45 +00:00
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include/JAGS/sarray/Range.h
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2005-11-09 11:16:04 +00:00
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include/JAGS/sarray/RangeIterator.h
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2004-05-27 15:18:45 +00:00
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include/JAGS/sarray/SArray.h
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2009-01-19 01:19:07 +00:00
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include/JAGS/util/dim.h
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include/JAGS/util/integer.h
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include/JAGS/util/logical.h
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include/JAGS/util/nainf.h
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2010-05-10 13:14:39 +00:00
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include/JAGS/version.h
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2010-05-22 06:11:46 +00:00
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lib/JAGS/modules-%%PORTVERSION%%/basemod.la
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lib/JAGS/modules-%%PORTVERSION%%/basemod.so
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lib/JAGS/modules-%%PORTVERSION%%/bugs.la
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lib/JAGS/modules-%%PORTVERSION%%/bugs.so
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lib/JAGS/modules-%%PORTVERSION%%/dic.la
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lib/JAGS/modules-%%PORTVERSION%%/dic.so
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lib/JAGS/modules-%%PORTVERSION%%/glm.la
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lib/JAGS/modules-%%PORTVERSION%%/glm.so
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lib/JAGS/modules-%%PORTVERSION%%/lecuyer.la
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lib/JAGS/modules-%%PORTVERSION%%/lecuyer.so
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lib/JAGS/modules-%%PORTVERSION%%/mix.la
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lib/JAGS/modules-%%PORTVERSION%%/mix.so
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lib/JAGS/modules-%%PORTVERSION%%/msm.la
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lib/JAGS/modules-%%PORTVERSION%%/msm.so
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2004-05-27 15:18:45 +00:00
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lib/libjags.la
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2009-01-19 01:19:07 +00:00
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lib/libjags.so
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2010-05-10 13:14:39 +00:00
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lib/libjags.so.2
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2009-01-19 01:19:07 +00:00
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lib/libjrmath.la
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lib/libjrmath.so
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lib/libjrmath.so.0
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2009-01-21 10:19:45 +00:00
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libdata/pkgconfig/jags.pc
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2009-01-19 01:19:07 +00:00
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libexec/jags-terminal
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2010-05-10 13:14:39 +00:00
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%%PORTDOCS%%%%DOCSDIR%%/jags_developer_manual.pdf
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%%PORTDOCS%%%%DOCSDIR%%/jags_installation_manual.pdf
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2009-01-19 01:19:07 +00:00
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%%PORTDOCS%%%%DOCSDIR%%/jags_user_manual.pdf
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2009-01-21 10:19:45 +00:00
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/Rcheck.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/bench.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/check.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ReadMe
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/Makefile
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/ReadMe
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/bench-test2.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/bench-test3.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blocker-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blocker-init.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blocker.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blockert-init.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blockert.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blockht-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blockht.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/notest2.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/notest3.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/test1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/bones-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/bones-init.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/bones.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/test1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/dyes-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/dyes-init.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/dyes.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/test1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/bench-test2.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil-inits.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil2.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil3.bug
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2010-05-10 13:14:39 +00:00
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/test1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/test2.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/test2.cmd
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2009-01-21 10:19:45 +00:00
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/ReadMe
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/bench-test2.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/equiv-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/equiv-init.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/equiv.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/equivmiss-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/test1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/test2.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler-inits.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/inhaler/test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/ReadMe
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/kidney-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/kidney-init.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/kidney.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/notest1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/leuk-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/leuk-init.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/leuk-poisson.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/leuk-s.dat
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/leuk.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/leuk.in
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/leukfr-s.dat
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/leukfr.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/leukfr.in
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/leuk/test1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/line/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/line/line-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/line/line-inits.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/line/line.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/line/test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/line/test1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/litters/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/litters/litters-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/litters/litters-init.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/litters/test1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/lsat/bench-test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/lsat/lsat-data.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/mice/test1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/mice/test1.cmd
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/bench-test4.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits1.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits2.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits3.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits4.R
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant.bug
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant2.bug
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2009-08-17 19:50:52 +00:00
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/test3.R
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2009-01-21 10:19:45 +00:00
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/test3.cmd
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2009-08-17 19:50:52 +00:00
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/test4.R
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2009-01-21 10:19:45 +00:00
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/test4.cmd
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/stagnant
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/schools
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/pigs
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/orange
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/jaw
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/ice
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/hearts
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/eyes
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/dugongs
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/cervix
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/birats
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/biops
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/beetles
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/asia
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/alli
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/air
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/seeds
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/salm
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/rats
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/pump
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/oxford
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/mice
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/lsat
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/litters
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/line
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/leuk
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/kidney
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/inhaler
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/equiv
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/epil
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/dyes
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/bones
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/blocker
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/R
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%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
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2005-11-09 11:16:04 +00:00
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%%PORTDOCS%%@dirrm %%DOCSDIR%%
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2010-05-22 06:11:46 +00:00
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@dirrm lib/JAGS/modules-%%PORTVERSION%%
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2009-01-19 01:19:07 +00:00
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@dirrm lib/JAGS
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@dirrm include/JAGS/util
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2005-11-09 11:16:04 +00:00
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@dirrm include/JAGS/sarray
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@dirrm include/JAGS/sampler
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@dirrm include/JAGS/model
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@dirrm include/JAGS/graph
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2009-01-19 01:19:07 +00:00
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@dirrm include/JAGS/function
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@dirrm include/JAGS/distribution
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2005-11-09 11:16:04 +00:00
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@dirrm include/JAGS/compiler
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@dirrm include/JAGS
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