2017-11-29 22:17:43 +00:00
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PORTNAME= cutadapt
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2021-03-06 17:55:38 +00:00
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DISTVERSION= 3.3
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2021-05-04 13:20:39 +00:00
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PORTREVISION= 1
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2017-11-29 22:17:43 +00:00
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CATEGORIES= biology python
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MASTER_SITES= CHEESESHOP
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PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
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MAINTAINER= jwb@FreeBSD.org
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2018-09-20 14:10:52 +00:00
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COMMENT= Trim adapters from high-throughput sequencing reads
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2017-11-29 22:17:43 +00:00
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LICENSE= MIT
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2018-09-20 14:10:52 +00:00
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LICENSE_FILE= ${WRKSRC}/LICENSE
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2017-11-29 22:17:43 +00:00
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2019-03-24 21:20:24 +00:00
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BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR}
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2021-03-06 21:18:14 +00:00
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RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen==1.1:archivers/py-xopen@${PY_FLAVOR} \
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2021-05-04 13:20:39 +00:00
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${PYTHON_PKGNAMEPREFIX}dnaio==0.5.1:biology/py-dnaio@${PY_FLAVOR}
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2019-03-24 21:20:24 +00:00
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TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \
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2022-04-06 23:20:09 +00:00
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${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}pytest-mock>0:devel/py-pytest-mock@${PY_FLAVOR}
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2017-11-29 22:17:43 +00:00
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2021-02-02 20:39:09 +00:00
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USES= python:3.6+
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2019-03-24 21:20:24 +00:00
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USE_PYTHON= autoplist concurrent cython distutils
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2017-11-29 22:17:43 +00:00
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post-install:
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@${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cutadapt/*.so
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2019-03-24 21:20:24 +00:00
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do-test:
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@cd ${WRKSRC} && ${PYTHON_CMD} -m pytest
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2017-11-29 22:17:43 +00:00
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.include <bsd.port.mk>
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