freebsd-ports/biology/Makefile

# $FreeBSD$
#

    SUBDIR += babel
    SUBDIR += biojava
    SUBDIR += chemeq
    SUBDIR += clustalw
    SUBDIR += coalesce
    SUBDIR += deft
    SUBDIR += dna-qc
    SUBDIR += emboss
    SUBDIR += fasta
    SUBDIR += fasta3
    SUBDIR += fastdnaml
    SUBDIR += fluctuate
    SUBDIR += gaussian98
    SUBDIR += genpak
    SUBDIR += gperiodic
    SUBDIR += grappa
    SUBDIR += hmmer
    SUBDIR += kinemage
    SUBDIR += lamarc
    SUBDIR += migrate
    SUBDIR += molden
    SUBDIR += mopac
    SUBDIR += nab
    SUBDIR += ncbi-toolkit
    SUBDIR += nclever
    SUBDIR += ortep3
    SUBDIR += p5-AcePerl
    SUBDIR += p5-bioperl
    SUBDIR += p5-bioperl-devel
    SUBDIR += paml
    SUBDIR += phylip
    SUBDIR += platon
    SUBDIR += povchem
    SUBDIR += psi88
    SUBDIR += py-biopython
    SUBDIR += rasmol
    SUBDIR += recombine
    SUBDIR += ruby-bio
    SUBDIR += seaview
    SUBDIR += seqio
    SUBDIR += sim4
    SUBDIR += tinker
    SUBDIR += treeviewx
    SUBDIR += xdrawchem
    SUBDIR += xmolwt

.include <bsd.port.subdir.mk>
Change Id->FreeBSD. 1999-08-25 04:58:03 +00:00			`# $FreeBSD$`
The new ports category "biology" starts here today. No Darwin jokes please! 1997-12-13 05:54:24 +00:00			`#`

Activate babel. 1997-12-21 21:58:57 +00:00			`SUBDIR += babel`
Initial import of biology/biojava PR: 21678 Submitted by: Brad Chapman <chapmanb@arches.uga.edu> 2000-10-10 11:14:03 +00:00			`SUBDIR += biojava`
Activating the chemeq, clustalw, paml, and phylip ports. 2000-07-10 03:26:57 +00:00			`SUBDIR += chemeq`
			`SUBDIR += clustalw`
Add coalesce 1.50, a program to fit population models. 2001-08-06 14:41:58 +00:00			`SUBDIR += coalesce`
Added deft and ortep3 1999-05-19 13:38:46 +00:00			`SUBDIR += deft`
Add dna-qc 1993.07.26, a quality control algorithm for DNA sequencing projects. PR: 32998 Submitted by: Tony Maher <tonym@biolateral.com.au> 2001-12-19 03:20:48 +00:00			`SUBDIR += dna-qc`
Add emboss, the European Molecular Biology Open Software Suite PR: ports/20317 Submitted by: Johann Visagie <johann@egenetics.com> 2000-07-31 19:13:54 +00:00			`SUBDIR += emboss`
New port: biology/fasta, the FASTA2 suite of DNA and protein sequence search tools PR: 24715 Submitted by: Johann Visagie <johann@egenetics.com> 2001-02-11 16:24:18 +00:00			`SUBDIR += fasta`
- New port: biology/fasta3, which comprises the FASTA3 suite of DNA and protein sequence search programs - FASTA3 updates only some of the elements of FASTA2, which is why I have submitted ports of both versions (as biology/fasta and biology/fasta3) PR: 24716 Submitted by: Johann Visagie <johann@egenetics.com> 2001-02-11 16:28:59 +00:00			`SUBDIR += fasta3`
Initial import of fastDNAml Version 1.2.2 The faster variant of DNAML, makes phylogenetic trees using maximum likelihood PR: 21931 Submitted by: Motomichi Matsuzaki <mzaki@e-mail.ne.jp> 2000-10-12 12:31:13 +00:00			`SUBDIR += fastdnaml`
Add fluctuate 1.30, a program to fit population models. 2001-08-06 14:45:39 +00:00			`SUBDIR += fluctuate`
add gaussian98, an ab-initio molecular orbital calculation program. PR: 23577 Submitted by: NAKATA, Maho <chat95@mbox.kyoto-inet.or.jp> 2001-02-10 19:38:20 +00:00			`SUBDIR += gaussian98`
reimport biology/genpak 2001-02-28 02:46:51 +00:00			`SUBDIR += genpak`
Added gperiodic and xmolwt 1999-09-06 20:09:12 +00:00			`SUBDIR += gperiodic`
Add grappa 1.0.2, Genome Rearrangements Analysis and Phylogeny Software. PR: 28541 Submitted by: dbader@eece.unm.edu 2001-07-04 08:39:40 +00:00			`SUBDIR += grappa`
Turn on hmmer. 1998-07-12 23:30:50 +00:00			`SUBDIR += hmmer`
Activate kinemage 1998-01-29 17:25:59 +00:00			`SUBDIR += kinemage`
Add lamarc 2001.08.06, a package of programs for computing population parameters. 2001-08-07 08:17:58 +00:00			`SUBDIR += lamarc`
Add migrate 1.2, a program to estimate population sizes and migration rates. 2001-08-06 13:07:46 +00:00			`SUBDIR += migrate`
Add platon and molden 1999-05-07 06:59:25 +00:00			`SUBDIR += molden`
Add mopac and psi88 (Move mopac and psi88 from misc to biology) 1999-05-06 08:18:35 +00:00			`SUBDIR += mopac`
This is nab (nucleic acid builder), a language for macromolecules PR: 21585 Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU> 2000-10-10 02:56:57 +00:00			`SUBDIR += nab`
New Port: biology/ncbi-toolkit National Center for Biotechnology Information (NCBI) Development Toolkit. PR: 22388 Submitted by: Tony Maher <tony.maher@ebioinformatics.com> 2000-10-29 13:56:24 +00:00			`SUBDIR += ncbi-toolkit`
Add nclever 4.0, a character-based version of NCBI's Entrez program. PR: 30783 Submitted by: Tony Maher <tonym@biolateral.com.au> 2001-09-26 09:22:02 +00:00			`SUBDIR += nclever`
Added deft and ortep3 1999-05-19 13:38:46 +00:00			`SUBDIR += ortep3`
Add p5-AcePerl, a perl interface to the ACEDB genome database system PR: ports/20223 Submitted by: Johann Visagie <johann@egenetics.com> 2000-07-28 13:16:10 +00:00			`SUBDIR += p5-AcePerl`
Add BioPerl, a collection of Perl5 mods for bioinformatics/genomics PR: ports/20252 Submitted by: Johann Visagie <johann@egenetics.com> 2000-07-28 14:06:03 +00:00			`SUBDIR += p5-bioperl`
Add p5-bioperl-devel 0.9.0, a collection of Perl modules for bioinformatics (developer's release). 2001-08-14 09:36:36 +00:00			`SUBDIR += p5-bioperl-devel`
Activating the chemeq, clustalw, paml, and phylip ports. 2000-07-10 03:26:57 +00:00			`SUBDIR += paml`
			`SUBDIR += phylip`
Add platon and molden 1999-05-07 06:59:25 +00:00			`SUBDIR += platon`
Activate povchem. 1998-03-16 07:01:32 +00:00			`SUBDIR += povchem`
Add mopac and psi88 (Move mopac and psi88 from misc to biology) 1999-05-06 08:18:35 +00:00			`SUBDIR += psi88`
Add py-biopython, is a collection of Python packages and modules created by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language. PR: ports/20260 Submitted by: Johann Visagie <johann@egenetics.com> 2000-07-31 12:12:24 +00:00			`SUBDIR += py-biopython`
Activate rasmol. 1997-12-15 17:47:41 +00:00			`SUBDIR += rasmol`
Add recombine 1.40, a program to fit population models across sites. 2001-08-06 14:49:53 +00:00			`SUBDIR += recombine`
Add ruby-bio (BioRuby), an integrated environment for Bioinformatics written in Ruby. 2001-10-24 06:21:52 +00:00			`SUBDIR += ruby-bio`
Activate seaview. 1997-12-21 22:05:43 +00:00			`SUBDIR += seaview`
Add seqio 1.2.2, a set of C functions which can read/write biological sequence files. PR: 29922 Submitted by: Tony Maher <tonym@biolateral.com.au> 2001-08-22 12:07:26 +00:00			`SUBDIR += seqio`
Add sim4, an implementation of the sim4 algorithm for aligning expressed DNA with genomic sequences PR: ports/20219 Submitted by: Johann Visagie <johann@egenetics.com> 2000-07-27 14:33:00 +00:00			`SUBDIR += sim4`
Activate tinker. 1998-11-17 04:54:28 +00:00			`SUBDIR += tinker`
Add treeviewx 0.1.1, a phylogenetic tree viewer. PR: 29770 Submitted by: Tony Maher <tonym@biolateral.com.au> 2001-08-17 08:39:28 +00:00			`SUBDIR += treeviewx`
Add xdrawchem 0.82 - a program for drawing molecules 2000-07-19 13:23:02 +00:00			`SUBDIR += xdrawchem`
Added gperiodic and xmolwt 1999-09-06 20:09:12 +00:00			`SUBDIR += xmolwt`
The new ports category "biology" starts here today. No Darwin jokes please! 1997-12-13 05:54:24 +00:00
			`.include <bsd.port.subdir.mk>`