McStas component library for McStas, a tool for simulating neutron
instrumentation and experiments using a ray-tracing formalism.
Currently the main use of McStas is in the field of instrument
design.
WWW: http://www.mcstas.org
PR: 194847
Submitted by: Erik B. Knudsen <erkn@fysik.dtu.dk>
Monte Carlo ray tracing simulations of neutron experiments.
McStas is a tool for simulating neutron instrumentation and experiments
using a ray-tracing formalism. Currently the main use of McStas is
in the field of instrument design.
WWW: http://www.mcstas.org
PR: 194846
Submitted by: Erik B. Knudsen <erkn@fysik.dtu.dk>
2014-12-27 games/secretmaryochronicles-music: Depends on expiring games/secretmaryochronicles
2014-12-27 science/mpb: Broken for more than 6 months
2014-12-27 x11-fm/pbi-thumbnailer: Broken for more than 6 months
2014-11-07 math/elmer-umfpack: Obsoleted by cad/elmerfem
2014-11-07 science/elmer-eio: Obsoleted by cad/elmerfem
2014-11-07 science/elmer-matc: Obsoleted by cad/elmerfem
2014-11-07 science/elmer-meshgen2d: Obsoleted by cad/elmerfem
2014-11-07 science/elmergrid: Obsoleted by cad/elmerfem
PySAL is a cross-platform library of spatial analysis functions written in
Python. It is intended to support the development of high level applications for
spatial analysis.
WWW: https://pypi.python.org/pypi/PySAL
WWW: http://pysal.org/
The ECMWF GRIB API is an application program interface accessible from C,
FORTRAN and Python programs developed for encoding and decoding WMO FM-92 GRIB
edition 1 and edition 2 messages. A useful set of command line tools is also
provided to give quick access to GRIB messages.
WWW: https://software.ecmwf.int/wiki/display/GRIB/Home
PR: 188810
Submitted by: uffe
===============================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
PR: 188809
Submitted by: uffer
===============================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
PR: 188808
Submitted by: uffer
===============================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
PR: 179854
Submitted by: uffe (uffe.org)
Major QA: marino
==================================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
WWW: http://sigrok.org/
with both Smitch charts and SWR/PWR curves. Does drag-and-drop schematic entry
with direct entry of component values as well as "drag tuning". Can import
load parameters directly from the following:
- EZNEC (and EZNEC GAM files)
- miniVNA and miniVNApro
- AIM4170
- CocoaNEC
- Rig Expert ".aaplot" files
- Touchstone S1P ".s1p" files (shunt and series)
Reviewed by: db, skreuzer
Approved by: db, skreuzer (mentors)
Differential Revision: https://phabric.freebsd.org/D311
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a library that provides an implementation of the
interface. The netCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The netCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
Git repository: https://github.com/Unidata/netcdf-fortran
WWW: http://www.unidata.ucar.edu/software/netcdf/
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a library that provides an implementation of the
interface. The netCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The netCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
Git repository: https://github.com/Unidata/netcdf-cxx4
WWW: http://www.unidata.ucar.edu/software/netcdf/
GRIBEX is an interface for encoding and decoding WMO FM-92 GRIB edition 1
messages and some ancillary subroutines for controlling printing and debugging.
The GRIBEX software was developed at the European Centre for Medium-range
Weather Forecasts (ECMWF) and is part of the EMOS library. EMOS is mostly
written in Fortran. Therefore it has only a Fortran interface.
CGRIBEX is a lightweight version of GRIBEX written in ANSI C with a portable
Fortran interface. For best compatibility some of the C sources were converted
from the Fortran GRIBEX version.
WWW: https://code.zmaw.de/projects/cgribex
2014-04-16 ports-mgmt/pkgsearch: Upstream disappeared
2014-04-17 science/flounder: Unmaintained since 2002
2014-04-17 security/nbaudit: Unmaintained since 2002
2014-04-17 security/saint: Unmaintained since 2002
2014-04-17 graphics/gozer: Unmaintained since 2002
2014-04-17 misc/pdfmap: Unmaintained since 2002
2014-04-17 devel/showgrammar: Unmaintained since 2002
2014-04-17 biology/libgenome: Unmaintained since 2002
2014-04-17 deskutils/narval: Unmaintained since 2002
2014-04-17 devel/fampp: Unmaintained since 2002
2014-04-17 net-p2p/py-fngrab: Unmaintained since 2002
2014-04-17 misc/wmfirew: Unmaintained since 2002
2014-04-17 x11-wm/e16utils: Unmaintained since 2002
2014-04-17 misc/salias: Unmaintained since 2002
2014-04-17 print/latex2slides: Unmaintained since 2002
2014-04-17 lang/sxm: Unmaintained since 2002
2014-04-17 textproc/pybook: Unmaintained since 2002
2014-04-17 mail/mailcrypt: Unmaintained since 2002
2014-04-17 japanese/elvis: Unmaintained since 2002
2014-04-17 devel/prototype: Unmaintained since 2002
2014-04-17 print/wprint: Unmaintained since 2002
2014-04-17 science/euler: Unmaintained since 2002
2014-04-17 multimedia/gopchop: Unmaintained since 2002
2014-04-17 science/gdis: Unmaintained since 2002
2014-04-17 net/googolplex: Unmaintained since 2002
2014-04-17 lang/logo: Unmaintained since 2002
2014-04-17 textproc/roap: Unmaintained since 2002
2014-04-17 x11-wm/afterstep-i18n: Unmaintained since 2002
2014-04-17 games/yamsweeper: Unmaintained since 2002
2014-04-17 net-mgmt/echolot: Unmaintained since 2002
2014-04-17 security/pam_smb: Unmaintained since 2002
2014-04-18 devel/lua-redis-parser: Broken for more than 6 months
2014-04-18 biology/finchtv: Broken for more than 6 months
2014-04-18 net-im/ari-yahoo: Broken for more than 1 year (http://www.icculus.org/ari-yahoo/)
2014-04-12 net/pvm++: Unmaintained since 2001
2014-04-12 devel/ixlib: Unmaintained since 2001
2014-04-12 mail/althea: Unmaintained since 2001
2014-04-12 graphics/claraocr: Unmaintained since 2001
2014-04-12 graphics/qvplay: Unmaintained since 2001
2014-04-12 print/guitartex: Unmaintained since 2001
2014-04-12 print/pnm2ppa: Unmaintained since 2001
2014-04-12 graphics/opendis: Unmaintained since 2001
2014-04-12 net/gnome-mud: Unmaintained since 2001
2014-04-12 graphics/maverik: Unmaintained since 2001
2014-04-12 biology/rasmol: Unmaintained since 2001
2014-04-12 mail/mail2procmailrc: Unmaintained since 2001
2014-04-12 science/felt: Unmaintained since 2001
2014-04-12 textproc/pardiff: Unmaintained since 2001
2014-04-12 lang/klone: Unmaintained since 2001
2014-04-12 net/rmsg: Unmaintained since 2001
2014-04-12 net/sharity-light: Unmaintained since 2001
2014-04-12 biology/genpak: Unmaintained since 2001
2014-04-12 net/forg: Unmaintained since 2001
2014-04-12 misc/txt2regex: Unmaintained since 2001
2014-04-12 textproc/ipdf: Unmaintained since 2001
2014-04-12 graphics/plotmtv: Unmaintained since 2001
2014-04-12 devel/happydoc: Unmaintained since 2001
2014-04-12 print/cpp2latex: Unmaintained since 2001
2014-04-12 graphics/svg2swf: Unmaintained since 2001
2014-04-12 devel/flick: Unmaintained since 2001
2014-04-12 mail/smail: Unmaintained since 2001
2014-04-12 net/net-http: Unmaintained since 2001
2014-04-12 security/cfv: Unmaintained since 2001
2014-04-12 graphics/camediaplay: Unmaintained since 2001
2014-04-12 math/umatrix: Unmaintained since 2001
2014-02-26 www/trac-hierwiki: Runtime is broken, doesn't support Trac>0.11
2014-02-27 net-p2p/microdc2: Broken for more than 6 month
2014-02-27 www/openvrml: Broken for more than 6 month
2014-02-27 science/peekabot: Broken for more than 6 month
2014-02-27 misc/xbiso: Broken for more than 6 month
2014-02-27 net/hornetq: Broken for more than 6 month
2014-02-27 sysutils/slmon: Broken for more than 6 month
2014-02-27 www/trac-revtree: Broken for more than 6 months
2014-02-27 security/crack: Broken for more than 6 month
2014-02-27 sysutils/graphicboot: Broken for more then 6 month
2014-02-27 graphics/kgraphviewer: Broken for more than 6 month
2014-02-27 sysutils/ckl: Broken for more than 6 month
2014-02-27 japanese/trac: Broken for more than 6 month
2014-02-27 lang/opa: Broken for more than 6 month
2014-02-27 sysutils/mmore: Broken for more than 6 month
2014-02-27 www/trac-announcer: Broken for more than 6 month
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers,
hygrometers, anemometers, light meters, DAQs, dataloggers,
function generators, spectrum analyzers, power supplies,
GPIB interfaces, and more.
sigrok-cli is a command-line tool written in C, which uses both libsigrok
and libsigrokdecode to provide the basic sigrok functionality from the
command-line. Among other things, it's useful for scripting purposes.
WWW: http://sigrok.org/
PR: ports/179855
Submitted by: Uffe Jakobsen <uffe@uffe.org>
pyaixi is a pure Python implementation of the Monte Carlo-AIXI-Context Tree
Weighting (MC-AIXI-CTW) artificial intelligence algorithm.
This is an approximation of the AIXI universal artificial intelligence
algorithm, which describes a model-based, reinforcement-learning agent capable
of general learning.
WWW: https://github.com/gkassel/pyaixi
PR: ports/184572
Submitted by: Johannes Jost Meixner <xmj chaot.net>
Pydap is an implementation of the Opendap/DODS protocol, written from scratch.
You can use Pydap to access scientific data on the internet without having to
download it; instead, you work with special array and iterable objects that
download data on-the-fly as necessary, saving bandwidth and time. The module
also comes with a robust-but-lightweight Opendap server, implemented as a WSGI
application.
WWW: https://pypi.python.org/pypi/Pydap
PR: ports/181687
Submitted by: Johannes Meixner <xmj chaot.net>
Pupynere is a Python module for reading and writing NetCDF files, using the same
API as Scientific.IO.NetCDF and pynetcdf. It depends only on Numpy, so you don't
need to have the NetCDF library installed.
WWW: https://pypi.python.org/pypi/pupynere/
PR: ports/179744
Submitted by: Johannes Jost Meixner <xmj@chaot.net>
Unfortunately, this also affects some ports using QT3 as a GUI toolkit.
Changes to infrastructure files:
- bsd.kde.mk : obsolete, remove
- bsd.qt.mk : note that a CONFLICTS_BUILD line can probably go after a while
- CHANGES : document the removals from bsd.port.mk
- KNOBS : remove KDE and QT (KDE4 and QT4 should be used instead)
- MOVED : add the removed ports
PR: ports/180745
Submitted by: rene
Approved by: portmgr (bapt)
Exp-run by: bapt
Coards is a parser for time values represented using the COADS convention.
WWW: https://pypi.python.org/pypi/coards
PR: ports/179576
Submitted by: Johannes Meixner <xmj@chaot.net>
Voro++ is a software library for carrying out three-dimensional computations
of the Voronoi tessellation. A distinguishing feature of the Voro++ library
is that it carries out cell-based calculations, computing the Voronoi cell
for each particle individually. It is particularly well-suited for
applications that rely on cell-based statistics, where features of Voronoi
cells (eg. volume, centroid, number of faces) can be used to analyze a
system of particles.
WWW: http://math.lbl.gov/voro++/
PR: 177678
Submitted by: jwbacon@tds.net
Feature safe: yes
Pyteomics is a collection of lightweight and handy tools for Python
that help to handle various sorts of proteomics data. Pyteomics
provides a growing set of modules to facilitate the most common
tasks in proteomics data analysis, such as:
* calculation of basic physico-chemical properties of polypeptides:
. mass and isotopic distribution
. charge and pI
. chromatographic retention time
* access to common proteomics data:
. MS or LC-MS data
. FASTA databases
. search engines output
* easy manipulation of sequences of modified peptides and proteins
WWW: https://pypi.python.org/pypi/pyteomics
FVCOM is a prognostic, unstructured-grid, finite-volume, free-surface,
3-D primitive equation coastal ocean circulation model developed
by UMASSD-WHOI joint efforts.
WWW: http://fvcom.smast.umassd.edu/FVCOM/index.html
PR: ports/166726
PR: ports/166728
Submitted by: Jason Bacon <jwbacon at tds.net>
graphics/py-visual||2013-02-06|Has expired: Depends on the expired x11-toolkits/gtkglarea [1]
math/gnuplot+||2013-02-06|Upstream says: This package is obsolete. The author does not recommend to use it
science/vis5d+||2013-02-06|No new release since 2001, depends on expired x11-toolkits/gtkglarea [2]
Approved by: stephen [1],
nivit [2]
- Update openbabel to 2.3.2
- Switch to CMake build system
- Add PYTHON and CAIRO options
- Don't rename babel binary, mark conflict with ancient biology/babel
science/py-openbabel:
- Merge py-openbabel to openbabel
other:
- chase openbabel update
algorithms in the tightly-knit scientific Python world (numpy, scipy,
matplotlib). It aims to provide simple and efficient solutions to
learning problems, accessible to everybody and reusable in various contexts:
machine-learning as a versatile tool for science and engineering.
WWW: http://scikit-learn.org/
Feature safe: yes
