LibGeoDecomp (Library for Geometric Decomposition codes) is an
auto-parallelizing library for computer simulations. It is specifically targeted
computational science applications in the context of supercomputers and
heterogeneous systems. The library eases development of such tightly coupled
codes by essentially taking over the parallel programming: it handles both, the
parallelization itself and parameter tuning. This enables scientists to focus on
their simulation code, rather than the technical details of the parallel
computer.
PR: 213688
Submitted by: Kurt Kanzenbach <kurt@kmk-computers.de>
Reviewed by: matthew
Approved by: matthew (mentor)
Differential Revision: https://reviews.freebsd.org/D9390
Libaec provides fast lossless compression of 1 up to 32 bit wide signed or
unsigned integers (samples). The library achieves best results for low entropy
data as often encountered in space imaging instrument data or numerical model
output from weather or climate simulations. While floating point representations
are not directly supported, they can also be efficiently coded by grouping
exponents and mantissa.
Libaec implements Golomb-Rice coding as defined in the Space Data System
Standard documents 121.0-B-2 and 120.0-G-2.
Libaec includes a free drop-in replacement for the SZIP library. Just replace
SZIP's shared library libsz.so* with libaec.so* and libsz.so* from libaec. Code
which is dynamically linked with SZIP such as HDF5 should continue to work with
libaec. No re-compilation required. HDF5 files which contain SZIP encoded data
can be decoded by HDF5 using libaec and vice versa.
WWW: https://gitlab.dkrz.de/k202009/libaec
Two releases of HDF5 are available for download. HDF5-1.10 should read files
created with earlier releases, but problem arise with MED and this version.
domain specific languages into plain C++ on top of the `TFEL`
library. Those languages covers three kind of material knowledge:
- material properties (for instance the
Young modulus, the thermal conductivity, etc.)
- mechanical behaviours. Numerical performances of
generated mechanical behaviours was given a particular
attention. Various benchmarks shows that `MFront`
implementations are competitive with native implementations
available in the `Cast3M`, `Code-Aster` and `Cyrano3` solvers.
- simple point-wise models, such as material swelling
used in fuel performance codes.
`MFront` comes with an handy easy-to-use tool called `MTest` that can
test the local behaviour of a material, by imposing independent
constraints on each component of the strain or the stress. This tool
has been much faster (from ten to several hundred times depending on
the test case) than using a full-fledged finite element solver.
WWW: http://tfel.sourceforge.net/
PR: 212375
Submitted by: Pedro F. Giffuni
2016-07-04 security/openpgpsdk: Broken for more than 6 months
2016-07-04 security/radiusniff: Broken for more than 6 months
2016-07-04 security/pear-Auth_OpenID: Broken for more than 6 months
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2016-07-04 multimedia/vic: Depends on expiring devel/uclmmbase
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2016-07-04 net-mgmt/ipfm: Broken for more than 6 months
2016-04-11 deskutils/qlabels: Does not fetch, unmaintained
2016-04-14 french/tvdownloader: Many channels have modified their protocols and cannot be DL anymore
2016-04-14 comms/cdr_read: unfetchable
2016-04-14 russian/rubygem-rutils: Deprecated by upstream
2016-04-14 devel/rubygem-dotenv-deployment: Deprecated by upstream in latest version (0.3.0)
2016-04-15 www/p5-LWP-ConsoleLogger: Depends on expiring www/p5-HTTP-CookieMonster
2016-04-15 www/p5-WWW-Mechanize-Cached: Depends on expiring www/p5-HTTP-CookieMonster
2016-04-15 www/p5-HTTP-CookieMonster: Broken for more than 6 months
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2016-04-15 sysutils/su2: Broken for more than 6 months
2016-04-15 www/download-gemist: Broken for more than 6 months
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2016-04-15 comms/libfec: Broken for more than 6 months
2016-04-15 deskutils/ladon: Broken for more than 6 months
Sponsored by: Essen Linuxhotel Hackathon 2016
The goals of scikit-fuzzy are:
* To provide the community with a robust toolkit of independently developed
and implemented fuzzy logic algorithms
* To increase the attractiveness of scientific Python as a valid alternative
to closed-source options.
WWW: https://github.com/scikit-fuzzy/scikit-fuzzy/
PR: 205621
Submitted by: Yuri Victorovich <yuri@rawbw.com>
2015-12-30 www/ocsigen: Broken for more than 6 months
2015-12-30 devel/monodevelop-database: Broken for more than 6 months
2015-12-30 lang/cduce: Broken for more than 6 months
2015-12-30 science/hdf-java: Broken for more than 6 months
2015-12-30 math/p5-Math-Geometry-Planar-GPC-Polygon: Broken for more than 6 months
2015-12-30 www/eliom: Depends on broken and expiring www/ocsigen
2015-12-30 audio/py-fastaudio: Broken for more than 6 months
2015-12-30 devel/jgoodies-common: Broken for more than 6 months
2015-12-30 graphics/pinta: Broken for more than 6 months
2015-12-30 games/kanatest: Broken for more than 6 months
2015-12-30 editors/bless: Broken for more than 6 months
2015-12-30 security/burpsuite: Broken for more than 6 months
Estimation, testing and regression modeling of subdistribution
functions in competing risks, as described in Gray (1988), A class
of K-sample tests for comparing the cumulative incidence of a
competing risk, Ann. Stat. 16:1141-1154, and Fine JP and Gray RJ
(1999), A proportional hazards model for the subdistribution of a
competing risk, JASA, 94:496-509.
WWW: https://cran.r-project.org/web/packages/cmprsk/
Orthanc aims at providing a simple, yet powerful standalone DICOM
server. It is designed to improve the DICOM flows in hospitals and to
support research about the automated analysis of medical images.
Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X
into a DICOM store (in other words, a mini-PACS system). Its
architecture is lightweight and standalone, meaning that no complex
database administration is required, nor the installation of third-party
dependencies.
What makes Orthanc unique is the fact that it provides a RESTful API.
Thanks to this major feature, it is possible to drive Orthanc from any
computer language. The DICOM tags of the stored medical images can be
downloaded in the JSON file format. Furthermore, standard PNG images can
be generated on-the-fly from the DICOM instances by Orthanc.
Orthanc lets its users focus on the content of the DICOM files, hiding
the complexity of the DICOM format and of the DICOM protocol.
WWW: http://www.orthanc-server.com/
PR: 199146
Submitted by: mp39590@gmail.com
McStas component library for McStas, a tool for simulating neutron
instrumentation and experiments using a ray-tracing formalism.
Currently the main use of McStas is in the field of instrument
design.
WWW: http://www.mcstas.org
PR: 194847
Submitted by: Erik B. Knudsen <erkn@fysik.dtu.dk>
Monte Carlo ray tracing simulations of neutron experiments.
McStas is a tool for simulating neutron instrumentation and experiments
using a ray-tracing formalism. Currently the main use of McStas is
in the field of instrument design.
WWW: http://www.mcstas.org
PR: 194846
Submitted by: Erik B. Knudsen <erkn@fysik.dtu.dk>
2014-12-27 games/secretmaryochronicles-music: Depends on expiring games/secretmaryochronicles
2014-12-27 science/mpb: Broken for more than 6 months
2014-12-27 x11-fm/pbi-thumbnailer: Broken for more than 6 months
2014-11-07 math/elmer-umfpack: Obsoleted by cad/elmerfem
2014-11-07 science/elmer-eio: Obsoleted by cad/elmerfem
2014-11-07 science/elmer-matc: Obsoleted by cad/elmerfem
2014-11-07 science/elmer-meshgen2d: Obsoleted by cad/elmerfem
2014-11-07 science/elmergrid: Obsoleted by cad/elmerfem
PySAL is a cross-platform library of spatial analysis functions written in
Python. It is intended to support the development of high level applications for
spatial analysis.
WWW: https://pypi.python.org/pypi/PySAL
WWW: http://pysal.org/
The ECMWF GRIB API is an application program interface accessible from C,
FORTRAN and Python programs developed for encoding and decoding WMO FM-92 GRIB
edition 1 and edition 2 messages. A useful set of command line tools is also
provided to give quick access to GRIB messages.
WWW: https://software.ecmwf.int/wiki/display/GRIB/Home
PR: 188810
Submitted by: uffe
===============================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
PR: 188809
Submitted by: uffer
===============================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
PR: 188808
Submitted by: uffer
===============================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
PR: 179854
Submitted by: uffe (uffe.org)
Major QA: marino
==================================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
WWW: http://sigrok.org/
with both Smitch charts and SWR/PWR curves. Does drag-and-drop schematic entry
with direct entry of component values as well as "drag tuning". Can import
load parameters directly from the following:
- EZNEC (and EZNEC GAM files)
- miniVNA and miniVNApro
- AIM4170
- CocoaNEC
- Rig Expert ".aaplot" files
- Touchstone S1P ".s1p" files (shunt and series)
Reviewed by: db, skreuzer
Approved by: db, skreuzer (mentors)
Differential Revision: https://phabric.freebsd.org/D311
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a library that provides an implementation of the
interface. The netCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The netCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
Git repository: https://github.com/Unidata/netcdf-fortran
WWW: http://www.unidata.ucar.edu/software/netcdf/
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a library that provides an implementation of the
interface. The netCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data. The netCDF software was developed at the Unidata
Program Center in Boulder, Colorado.
Git repository: https://github.com/Unidata/netcdf-cxx4
WWW: http://www.unidata.ucar.edu/software/netcdf/
GRIBEX is an interface for encoding and decoding WMO FM-92 GRIB edition 1
messages and some ancillary subroutines for controlling printing and debugging.
The GRIBEX software was developed at the European Centre for Medium-range
Weather Forecasts (ECMWF) and is part of the EMOS library. EMOS is mostly
written in Fortran. Therefore it has only a Fortran interface.
CGRIBEX is a lightweight version of GRIBEX written in ANSI C with a portable
Fortran interface. For best compatibility some of the C sources were converted
from the Fortran GRIBEX version.
WWW: https://code.zmaw.de/projects/cgribex
2014-04-16 ports-mgmt/pkgsearch: Upstream disappeared
2014-04-17 science/flounder: Unmaintained since 2002
2014-04-17 security/nbaudit: Unmaintained since 2002
2014-04-17 security/saint: Unmaintained since 2002
2014-04-17 graphics/gozer: Unmaintained since 2002
2014-04-17 misc/pdfmap: Unmaintained since 2002
2014-04-17 devel/showgrammar: Unmaintained since 2002
2014-04-17 biology/libgenome: Unmaintained since 2002
2014-04-17 deskutils/narval: Unmaintained since 2002
2014-04-17 devel/fampp: Unmaintained since 2002
2014-04-17 net-p2p/py-fngrab: Unmaintained since 2002
2014-04-17 misc/wmfirew: Unmaintained since 2002
2014-04-17 x11-wm/e16utils: Unmaintained since 2002
2014-04-17 misc/salias: Unmaintained since 2002
2014-04-17 print/latex2slides: Unmaintained since 2002
2014-04-17 lang/sxm: Unmaintained since 2002
2014-04-17 textproc/pybook: Unmaintained since 2002
2014-04-17 mail/mailcrypt: Unmaintained since 2002
2014-04-17 japanese/elvis: Unmaintained since 2002
2014-04-17 devel/prototype: Unmaintained since 2002
2014-04-17 print/wprint: Unmaintained since 2002
2014-04-17 science/euler: Unmaintained since 2002
2014-04-17 multimedia/gopchop: Unmaintained since 2002
2014-04-17 science/gdis: Unmaintained since 2002
2014-04-17 net/googolplex: Unmaintained since 2002
2014-04-17 lang/logo: Unmaintained since 2002
2014-04-17 textproc/roap: Unmaintained since 2002
2014-04-17 x11-wm/afterstep-i18n: Unmaintained since 2002
2014-04-17 games/yamsweeper: Unmaintained since 2002
2014-04-17 net-mgmt/echolot: Unmaintained since 2002
2014-04-17 security/pam_smb: Unmaintained since 2002
2014-04-18 devel/lua-redis-parser: Broken for more than 6 months
2014-04-18 biology/finchtv: Broken for more than 6 months
2014-04-18 net-im/ari-yahoo: Broken for more than 1 year (http://www.icculus.org/ari-yahoo/)
2014-04-12 net/pvm++: Unmaintained since 2001
2014-04-12 devel/ixlib: Unmaintained since 2001
2014-04-12 mail/althea: Unmaintained since 2001
2014-04-12 graphics/claraocr: Unmaintained since 2001
2014-04-12 graphics/qvplay: Unmaintained since 2001
2014-04-12 print/guitartex: Unmaintained since 2001
2014-04-12 print/pnm2ppa: Unmaintained since 2001
2014-04-12 graphics/opendis: Unmaintained since 2001
2014-04-12 net/gnome-mud: Unmaintained since 2001
2014-04-12 graphics/maverik: Unmaintained since 2001
2014-04-12 biology/rasmol: Unmaintained since 2001
2014-04-12 mail/mail2procmailrc: Unmaintained since 2001
2014-04-12 science/felt: Unmaintained since 2001
2014-04-12 textproc/pardiff: Unmaintained since 2001
2014-04-12 lang/klone: Unmaintained since 2001
2014-04-12 net/rmsg: Unmaintained since 2001
2014-04-12 net/sharity-light: Unmaintained since 2001
2014-04-12 biology/genpak: Unmaintained since 2001
2014-04-12 net/forg: Unmaintained since 2001
2014-04-12 misc/txt2regex: Unmaintained since 2001
2014-04-12 textproc/ipdf: Unmaintained since 2001
2014-04-12 graphics/plotmtv: Unmaintained since 2001
2014-04-12 devel/happydoc: Unmaintained since 2001
2014-04-12 print/cpp2latex: Unmaintained since 2001
2014-04-12 graphics/svg2swf: Unmaintained since 2001
2014-04-12 devel/flick: Unmaintained since 2001
2014-04-12 mail/smail: Unmaintained since 2001
2014-04-12 net/net-http: Unmaintained since 2001
2014-04-12 security/cfv: Unmaintained since 2001
2014-04-12 graphics/camediaplay: Unmaintained since 2001
2014-04-12 math/umatrix: Unmaintained since 2001
2014-02-26 www/trac-hierwiki: Runtime is broken, doesn't support Trac>0.11
2014-02-27 net-p2p/microdc2: Broken for more than 6 month
2014-02-27 www/openvrml: Broken for more than 6 month
2014-02-27 science/peekabot: Broken for more than 6 month
2014-02-27 misc/xbiso: Broken for more than 6 month
2014-02-27 net/hornetq: Broken for more than 6 month
2014-02-27 sysutils/slmon: Broken for more than 6 month
2014-02-27 www/trac-revtree: Broken for more than 6 months
2014-02-27 security/crack: Broken for more than 6 month
2014-02-27 sysutils/graphicboot: Broken for more then 6 month
2014-02-27 graphics/kgraphviewer: Broken for more than 6 month
2014-02-27 sysutils/ckl: Broken for more than 6 month
2014-02-27 japanese/trac: Broken for more than 6 month
2014-02-27 lang/opa: Broken for more than 6 month
2014-02-27 sysutils/mmore: Broken for more than 6 month
2014-02-27 www/trac-announcer: Broken for more than 6 month
