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freebsd-ports/biology
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Philip M. Gollucci 3781ecad36 - SUB_FILES += pkg-message 
PR:             ports/142407
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
2010-01-09 23:51:26 +00:00
..
adun Chase math/gsl update, 2009-12-01 20:33:45 +00:00
ariadne
artemis
avida For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
babel
belvu
biococoa
biojava - Update to 1.7 2009-05-01 09:33:42 +00:00
blast - SUB_FILES += pkg-message 2010-01-09 23:51:26 +00:00
blat
boinc-simap - Annotate that 8.x no longer needs libmap hack 2009-10-01 07:34:28 +00:00
chemeq
clustalw - Fix fetch error 2009-12-27 03:05:03 +00:00
consed Welcome to the new linux ports infrastructure which allows using 2009-03-19 17:28:51 +00:00
crimap For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
crux Update to Crux 1.2.0. 2009-09-19 17:58:13 +00:00
distribfold
dna-qc For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
dotter - broken checksum mismatch 2009-11-19 12:43:06 +00:00
embassy - Update MASTER_SITES 2009-08-14 08:33:22 +00:00
emboss - Update MASTER_SITES 2009-08-14 08:33:22 +00:00
fasta For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
fasta3 Update to 35.4.9 2009-08-23 15:47:37 +00:00
fastdnaml
finchtv
fluctuate For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
garlic
genpak - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
gff2ps
gmap
gperiodic - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
grappa
hmmer
iolib Io_lib is a library of file reading and writing code to provide a 2009-08-28 23:34:20 +00:00
jalview
kinemage
L-Breeder - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
lagan
lamarc - Mark most of my ports MAKE_JOBS_SAFE=yes 2009-05-16 06:27:56 +00:00
libgenome -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
libsbml - Mark MAKE_JOBS_UNSAFE 2009-11-20 22:53:09 +00:00
linux-foldingathome
lsysexp - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
mafft
mapm3 - Mark MAKE_JOBS_UNSAFE 2009-11-20 22:53:09 +00:00
migrate For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
molden Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
mopac - Update to 7.1.11 2009-12-22 11:25:15 +00:00
mrbayes Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from 2009-05-12 11:28:17 +00:00
mummer - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
muscle
ncbi-toolkit - Update to 2009.03.01 2009-03-28 16:59:39 +00:00
njplot Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
ortep3 For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
p5-AcePerl - Turn over a bunch of p5- ports that change infrequently to perl@ 2009-12-13 18:07:49 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - Update to 1.14 2009-09-08 12:08:12 +00:00
p5-Bio-Glite Bio::Glite is an interface to G-language Genome Analysis Environment 2009-04-02 18:24:59 +00:00
p5-Bio-Graphics - Update to 1.995 2010-01-07 02:27:20 +00:00
p5-Bio-MAGETAB Utilize %%SITE_PERL%% and %%PERL_ARCH%% in pkg-plists 2009-07-30 23:04:49 +00:00
p5-Bio-NEXUS Bio::NEXUS package provides an object-oriented, Perl-based 2009-08-22 20:39:51 +00:00
p5-Bio-Phylo For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
p5-Bio-SCF - Update to 1.03 2010-01-09 01:21:21 +00:00
p5-bioperl - Update to 1.6.1 2009-12-04 11:50:10 +00:00
p5-bioperl-run - Relax check on bioperl version; people keep forgetting to update this check 2009-08-02 20:00:08 +00:00
paml - Update to 4.3 2009-08-13 17:00:04 +00:00
phd2fasta
phrap
phred
phylip For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
phyml PhyML is a software that estimates maximum likelihood phylogenies from 2009-07-21 01:10:13 +00:00
platon Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
povchem
primer3 - Update to 1.1.4 2009-12-18 02:55:57 +00:00
protomol - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
psi88 Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
py-biopython - Update to 1.53 2010-01-06 00:29:25 +00:00
pycogent - Update to 1.4 2009-12-17 06:51:53 +00:00
pyfasta - Update to 0.3.7 2009-12-24 03:14:34 +00:00
pymol - Update lang/python26 and make Python 2.6.2 to the default Python version 2009-06-08 22:30:55 +00:00
python-nexus python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees) 2009-12-29 13:39:14 +00:00
rasmol Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
recombine For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
ruby-bio
seaview - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
seqio For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
sim4
ssaha
t_coffee
tinker Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
treepuzzle
treeviewx - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
tRNAscan-SE
velvet Velvet is a de novo genomic assembler specially designed for short read 2009-11-07 01:23:59 +00:00
wise - SBU_FILES += pkg-message 2010-01-08 01:30:20 +00:00
xdrawchem - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
xmolwt
Makefile python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees) 2009-12-29 13:39:14 +00:00