Andrej Zverev 14d750125f Cleanup supporting perl version 5.8 and 5.10, ...

lang/perl5.8 and lang/5.10 will be removed from ports tree soon.

2012-12-17 15:39:36 +00:00

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adun

- reset MAINTAINER

2012-06-26 05:44:19 +00:00

ariadne

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

artemis

Decommissioning java 1.5 (EOLed since October 2009):

2012-12-10 11:25:27 +00:00

avida

Update to version 2.12.4

2012-10-30 17:53:39 +00:00

babel

- Mark conflict with science/openbabel

2012-12-11 14:24:51 +00:00

biococoa

- cleanup comments

2012-10-13 13:39:56 +00:00

biojava

Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP

2012-12-11 07:26:38 +00:00

blast

- Take maintainership

2012-10-01 14:55:55 +00:00

blat

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

boinc-simap

- Adjust BOINC_* variables to be consistent with new system in boinc-client

2012-05-16 13:46:30 +00:00

chemeq

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clustalw

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consed

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crux

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dotter

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

embassy

- Take maintainership

2012-10-01 14:55:55 +00:00

emboss

- Take maintainership

2012-10-01 14:55:55 +00:00

fasta

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fasta3

- Take maintainership

2012-10-01 14:55:55 +00:00

fastdnaml

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finchtv

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

fluctuate

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garlic

Fix typos in COMMENT

2012-07-25 06:32:06 +00:00

genpak

- update png to 1.5.10

2012-06-01 05:26:28 +00:00

gff2ps

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gmap

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gperiodic

- update png to 1.5.10

2012-06-01 05:26:28 +00:00

grappa

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hmmer

- Take maintainership

2012-10-01 14:55:55 +00:00

iolib

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jalview

Decommissioning java 1.5 (EOLed since October 2009):

2012-12-10 11:25:27 +00:00

lagan

- Update to version 2.0

2012-11-15 07:04:29 +00:00

lamarc

- Fix build with clang

2012-12-03 11:27:47 +00:00

libgenome

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libsbml

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linux-foldingathome

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mafft

Mark as broken on sparc64: depends on thread-local storage, which is not

2012-09-08 08:30:39 +00:00

mapm3

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migrate

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molden

Update to 5.0.4

2012-12-14 17:47:16 +00:00

mopac

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mrbayes

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mummer

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muscle

Fix typos in COMMENT

2012-07-24 07:19:21 +00:00

ncbi-toolkit

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

njplot

s/X11BASE/LOCALBASE/, or equivalent.

2012-06-24 21:53:38 +00:00

ortep3

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p5-AcePerl

- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or

2012-06-10 18:42:48 +00:00

p5-Bio-ASN1-EntrezGene

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p5-Bio-Das

Cleanup supporting perl version 5.8 and 5.10,

2012-12-17 15:39:36 +00:00

p5-Bio-Das-Lite

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p5-Bio-GFF3

- Update to 1.5

2012-12-16 04:22:15 +00:00

p5-Bio-Glite

- Reset maintainer to perl@

2012-10-30 02:03:29 +00:00

p5-Bio-Graphics

Update to 2.31.

2012-12-07 13:49:15 +00:00

p5-Bio-MAGETAB

- Update to 1.26

2012-10-25 00:18:32 +00:00

p5-Bio-NEXUS

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p5-Bio-Phylo

- Update to 0.50

2012-06-12 18:55:28 +00:00

p5-Bio-SCF

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p5-bioperl

- Take maintainership

2012-10-01 14:55:55 +00:00

p5-bioperl-run

- Remove SITE_PERL from *_DEPENDS

2012-06-30 14:53:22 +00:00

paml

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phd2fasta

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phrap

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phred

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phylip

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phyml

- Reset MAINTAINER due to unrecoverable email bounce

2012-12-04 20:28:16 +00:00

platon

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plink

Add new ports biology/plink [1] and biology/plinkseq [2]:

2012-09-27 09:59:25 +00:00

plinkseq

Add new ports biology/plink [1] and biology/plinkseq [2]:

2012-09-27 09:59:25 +00:00

povchem

- update png to 1.5.10

2012-06-01 05:26:28 +00:00

primer3

- Take maintainership

2012-10-01 14:55:55 +00:00

protomol

Switch from libglut to freeglut and retire libglut. Libglut hasn't been

2012-08-04 22:52:02 +00:00

psi88

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py-biopython

- update to 1.60

2012-09-25 08:06:42 +00:00

pycogent

- Update to 1.5.3

2012-10-08 03:17:02 +00:00

pyfasta

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pymol

Switch from libglut to freeglut and retire libglut. Libglut hasn't been

2012-08-04 22:52:02 +00:00

python-nexus

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rasmol

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recombine

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ruby-bio

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seaview

- Update to version 4.4.0

2012-10-30 20:31:14 +00:00

seqan

Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.

2012-07-21 22:20:32 +00:00

seqio

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sim4

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ssaha

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

t_coffee

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

tinker

- Update to version 6.1.01

2012-12-01 00:00:43 +00:00

treepuzzle

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treeviewx

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

tRNAscan-SE

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velvet

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wise

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xdrawchem

science/openbabel:

2012-12-11 14:19:54 +00:00

xmolwt

- Support CC properly

2012-12-07 22:22:06 +00:00

Makefile

2012-11-26 benchmarks/gsbench: No more public distfiles

2012-11-28 09:05:54 +00:00