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freebsd-ports/biology
History
Tilman Keskinoz d022ce8307 Update to 3.8 
Approved by:	rmiya@cc.hirosaki-u.ac.jp (maintainer)
2003-01-08 12:05:57 +00:00
..
artemis
Initial import of artemis 4.0
2001-12-22 14:39:40 +00:00
avida
Make biology/avida building on -current again
2002-11-03 23:40:02 +00:00
babel
update biology/babel to properly output mm3 files.
2003-01-03 08:52:41 +00:00
biojava
Unbreak this port:
2002-06-16 01:08:49 +00:00
chemeq
upgrade to V110-1
2002-04-21 13:33:29 +00:00
clustalw
- Add a new patch
2002-03-27 14:01:57 +00:00
coalesce
Add coalesce 1.50, a program to fit population models.
2001-08-06 14:41:58 +00:00
crimap
Add crimap 2.4, a tool for the creation of multilocus linkage maps.
2002-03-27 14:42:56 +00:00
deft
PERL -> REINPLACE
2002-11-04 05:46:38 +00:00
distribfold
Fix typo: distribfold.org -> distributedfolding.org
2002-12-19 18:33:55 +00:00
dna-qc
PERL -> REINPLACE
2002-11-04 05:46:38 +00:00
emboss
- Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)
2002-09-27 08:58:19 +00:00
fasta
Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.
2001-07-03 09:08:26 +00:00
fasta3
Prefer <limits.h> over <values.h> as the latter has been removed from
2002-08-23 03:36:33 +00:00
fastdnaml
Add NOPORTDOCS support to pkg-plist
2001-07-08 18:15:34 +00:00
flip
PERL -> REINPLACE
2002-11-04 05:46:38 +00:00
fluctuate
Add fluctuate 1.30, a program to fit population models.
2001-08-06 14:45:39 +00:00
gaussian98
Remove USE_NEWGCC, which is no longer supported or required.
2002-08-31 02:38:29 +00:00
genpak
o Rollback PORTCOMMENT modifications while this feature's implementation
2002-11-10 16:48:51 +00:00
gff2ps
PERL -> REINPLACE
2002-11-04 01:56:21 +00:00
gperiodic
Deploy USE_GNOMENG infrastructure
2002-08-30 12:59:40 +00:00
grappa
- Update to version 1.0.3
2001-08-29 11:53:29 +00:00
hmmer
- Add patch that will, for -CURRENT only, change: -pthread -> -lc_r
2002-07-11 10:52:14 +00:00
kinemage
…
L-Breeder
Mark BROKEN due to "Unknown problem"
2002-11-25 02:11:13 +00:00
lamarc
Add lamarc 2001.08.06,
2001-08-07 08:17:58 +00:00
libgenome
add missing include
2002-12-29 04:44:13 +00:00
migrate
- Update to version 1.2.4
2001-08-22 14:43:45 +00:00
molden
Update to 3.8
2003-01-08 12:05:57 +00:00
mopac
Add NOPORTDOCS support to pkg-plist
2001-07-08 18:15:34 +00:00
nab
PERL -> REINPLACE
2002-11-04 01:56:21 +00:00
ncbi-toolkit
add forgotten "USE_REINPLACE=yes"
2002-09-21 14:56:18 +00:00
nclever
Add nclever 4.0, a character-based version of NCBI's Entrez program.
2001-09-26 09:22:02 +00:00
ortep3
…
p5-AcePerl
CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' in
2002-10-10 12:59:36 +00:00
p5-bioperl
- Update to version 0.7.2, somewhat overdue. :-)
2002-01-25 11:46:09 +00:00
p5-bioperl-devel
- Add NO_LATEST_LINK, which should've been there in the first place. :-(
2001-09-20 15:11:14 +00:00
paml
- Update to version 3.1
2001-08-29 12:00:08 +00:00
phylip
Update to version 3.6.a3.
2002-08-13 16:07:45 +00:00
pkg
…
platon
add USE_XLIB
2001-07-30 21:05:54 +00:00
povchem
PERL -> REINPLACE
2002-11-04 02:35:01 +00:00
primer3
Updated to fix problems as stated in PR ports/42915
2002-11-07 13:45:17 +00:00
psi88
update WWW and master site
2001-10-22 06:36:14 +00:00
py-biopython
Use $PYNUMERIC in the dependencies.
2002-07-15 11:37:35 +00:00
pymol
1. add a missing dependency on png and unbreak.
2002-11-19 23:01:49 +00:00
rasmol
o Rollback PORTCOMMENT modifications while this feature's implementation
2002-11-10 16:48:51 +00:00
recombine
Add recombine 1.40, a program to fit population models across sites.
2001-08-06 14:49:53 +00:00
ruby-bio
Use RUBY_MOD*.
2002-10-06 21:08:30 +00:00
seaview
unbroke by upgrade to 20021018
2002-11-20 14:03:25 +00:00
seqio
Remove a redundant trailing space.
2001-10-21 07:55:45 +00:00
sim4
Update to sim4-2002.03.03 to unbreak build.
2002-05-04 21:45:10 +00:00
spdbv
upgrade to 3.7
2003-01-02 03:57:58 +00:00
t_coffee
Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.
2002-01-25 14:58:16 +00:00
tinker
Upgrade tinker to the latest revision
2002-01-19 15:15:16 +00:00
treepuzzle
add treepuzzle 5.1
2002-11-20 08:54:10 +00:00
treeviewx
Chase new name of wxgtk shared library.
2002-09-09 14:21:08 +00:00
tRNAscan-SE
Port needs perl to build.
2002-11-04 01:47:57 +00:00
wise
Modify replace RE to match syntax of sed now ("\)" -> ")"
2002-11-05 01:44:12 +00:00
xdrawchem
Use ${ECHO_CMD} instead of ${ECHO} where you mean the echo command;
2002-01-29 09:39:59 +00:00
xmolwt
Deploy USE_GNOMENG infrastructure
2002-08-30 12:59:40 +00:00
Makefile
add treepuzzle 5.1
2002-11-20 08:54:10 +00:00