Jason Evans 91fb724efd Change CONFIGURE_ENV --> USE_CSTD. [1] ... Add missing pkg-plist entry for Parsing.so. [2] Change RUN_DEPENDS --> LIB_DEPENDS for optional math/atlas dependency. Submitted by: [1] erwin Reported by: [2] QAT		2009-06-10 01:25:02 +00:00
..
adun	- fix build for custom LOCALBASE in UL subdir	2009-06-02 02:33:05 +00:00
ariadne
artemis
avida	bump PORTREVISION after cmake update	2009-03-24 19:13:32 +00:00
babel
belvu
biococoa
biojava	- Update to 1.7	2009-05-01 09:33:42 +00:00
blast
blat
boinc-simap
chemeq
clustalw
consed	Welcome to the new linux ports infrastructure which allows using	2009-03-19 17:28:51 +00:00
crimap
crux	Change CONFIGURE_ENV --> USE_CSTD. [1]	2009-06-10 01:25:02 +00:00
distribfold
dna-qc
dotter
embassy	- Mark BROKEN does not compile	2009-03-23 21:56:39 +00:00
emboss	- Update to 0.1.24	2009-03-14 15:17:06 +00:00
fasta
fasta3	- Update to 35.4.7 [1]	2009-06-09 07:53:37 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic
grappa
hmmer
jalview
kinemage
L-Breeder
lagan
lamarc	- Mark most of my ports MAKE_JOBS_SAFE=yes	2009-05-16 06:27:56 +00:00
libgenome
libsbml	LibSBML is an open-source programming library to help you read, write,	2009-05-28 23:36:10 +00:00
linux-foldingathome
lsysexp
mafft
mapm3
migrate
molden
mopac
mrbayes	Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from	2009-05-12 11:28:17 +00:00
mummer
muscle
ncbi-toolkit	- Update to 2009.03.01	2009-03-28 16:59:39 +00:00
njplot	Convert most of remaining ports that depend on xorg-libraries to	2009-06-09 15:33:28 +00:00
ortep3
p5-AcePerl	- Mark most of my ports MAKE_JOBS_SAFE=yes	2009-05-16 06:27:56 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	- Update to 1.11	2009-06-08 09:30:07 +00:00
p5-Bio-Glite	Bio::Glite is an interface to G-language Genome Analysis Environment	2009-04-02 18:24:59 +00:00
p5-Bio-Graphics	- Update to 1.95	2009-06-02 21:34:06 +00:00
p5-Bio-Phylo
p5-bioperl	Remove variable PERL_VER from the ports tree at all - because	2009-03-05 17:56:24 +00:00
p5-bioperl-run	- Update to 1.6.1	2009-03-19 20:54:05 +00:00
paml
phd2fasta
phrap
phred
phylip
platon
povchem
primer3
protomol
psi88
py-biopython
pymol	- Update lang/python26 and make Python 2.6.2 to the default Python version	2009-06-08 22:30:55 +00:00
rasmol	Convert most of remaining ports that depend on xorg-libraries to	2009-06-09 15:33:28 +00:00
recombine
ruby-bio
seaview
seqio
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE
wise
xdrawchem
xmolwt
Makefile	Add the biology/crux port.	2009-06-08 23:49:59 +00:00