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freebsd-ports/biology
History
Wen Heping 49bdce58bc - Update to 0.99 
- Update my mail address to FreeBSD
2010-02-03 08:25:35 +00:00
..
adun
Chase math/gsl update,
2009-12-01 20:33:45 +00:00
ariadne
…
artemis
…
avida
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
babel
…
belvu
…
biococoa
…
biojava
…
blast
- SUB_FILES += pkg-message
2010-01-09 23:51:26 +00:00
blat
…
boinc-simap
- Annotate that 8.x no longer needs libmap hack
2009-10-01 07:34:28 +00:00
chemeq
…
clustalw
- Fix fetch error
2009-12-27 03:05:03 +00:00
consed
…
crimap
- actually remove old patch
2010-01-17 00:16:34 +00:00
crux
Update to Crux 1.2.0.
2009-09-19 17:58:13 +00:00
distribfold
…
dna-qc
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
dotter
- broken checksum mismatch
2009-11-19 12:43:06 +00:00
embassy
- Update MASTER_SITES
2009-08-14 08:33:22 +00:00
emboss
- Update MASTER_SITES
2009-08-14 08:33:22 +00:00
fasta
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
fasta3
Update to 35.4.9
2009-08-23 15:47:37 +00:00
fastdnaml
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finchtv
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fluctuate
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
garlic
…
genpak
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
gff2ps
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gmap
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gperiodic
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
grappa
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hmmer
…
iolib
Io_lib is a library of file reading and writing code to provide a
2009-08-28 23:34:20 +00:00
jalview
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kinemage
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L-Breeder
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
lagan
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lamarc
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libgenome
-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
2009-08-02 19:36:34 +00:00
libsbml
- Mark MAKE_JOBS_UNSAFE
2009-11-20 22:53:09 +00:00
linux-foldingathome
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lsysexp
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
mafft
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mapm3
- Mark MAKE_JOBS_UNSAFE
2009-11-20 22:53:09 +00:00
migrate
- Update to 3.1.1
2010-02-02 22:42:47 +00:00
molden
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
2009-09-13 00:08:01 +00:00
mopac
- Update to 7.1.11
2009-12-22 11:25:15 +00:00
mrbayes
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mummer
- Update my mail address to FreeBSD
2009-11-27 22:52:30 +00:00
muscle
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ncbi-toolkit
- use $SUB_FILES to dynamically adjust pkg-message
2010-01-31 03:42:20 +00:00
njplot
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
ortep3
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
p5-AcePerl
- Remove unneeded dependencies which is in perl-5.8.9 dist
2010-01-29 14:52:21 +00:00
p5-Bio-ASN1-EntrezGene
…
p5-Bio-Das
- Update to 1.14
2009-09-08 12:08:12 +00:00
p5-Bio-Glite
- Remove unneeded dependencies which is in perl-5.8.9 dist
2010-01-29 14:52:21 +00:00
p5-Bio-Graphics
- Remove unneeded dependencies which is in perl-5.8.9 dist
2010-01-29 14:52:21 +00:00
p5-Bio-MAGETAB
- Update to 0.99
2010-02-03 08:25:35 +00:00
p5-Bio-NEXUS
Bio::NEXUS package provides an object-oriented, Perl-based
2009-08-22 20:39:51 +00:00
p5-Bio-Phylo
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
p5-Bio-SCF
- Update to 1.03
2010-01-09 01:21:21 +00:00
p5-bioperl
- Remove unneeded dependencies which is in perl-5.8.9 dist
2010-01-29 14:52:21 +00:00
p5-bioperl-run
- Relax check on bioperl version; people keep forgetting to update this check
2009-08-02 20:00:08 +00:00
paml
- Update to 4.3
2009-08-13 17:00:04 +00:00
phd2fasta
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phrap
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phred
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phylip
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
phyml
PhyML is a software that estimates maximum likelihood phylogenies from
2009-07-21 01:10:13 +00:00
platon
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
2009-09-13 00:08:01 +00:00
povchem
…
primer3
- Update to 1.1.4
2009-12-18 02:55:57 +00:00
protomol
- Switch SourceForge ports to the new File Release System: categories starting with B,C
2009-08-22 00:15:15 +00:00
psi88
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
2009-09-13 00:08:01 +00:00
py-biopython
- Update to 1.53
2010-01-06 00:29:25 +00:00
pycogent
- Update to 1.4
2009-12-17 06:51:53 +00:00
pyfasta
- Update to 0.3.7
2009-12-24 03:14:34 +00:00
pymol
…
python-nexus
python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)
2009-12-29 13:39:14 +00:00
rasmol
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
recombine
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
ruby-bio
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seaview
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
seqio
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
sim4
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ssaha
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t_coffee
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tinker
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
2009-09-13 00:08:01 +00:00
treepuzzle
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treeviewx
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
tRNAscan-SE
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velvet
Velvet is a de novo genomic assembler specially designed for short read
2009-11-07 01:23:59 +00:00
wise
- SBU_FILES += pkg-message
2010-01-08 01:30:20 +00:00
xdrawchem
- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
2009-07-31 13:57:52 +00:00
xmolwt
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Makefile
python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)
2009-12-29 13:39:14 +00:00