Max Brazhnikov 4beaa15d30 - Mark conflict with science/openbabel ... - Trim Makefile header		2012-12-11 14:24:51 +00:00
..
adun	- reset MAINTAINER	2012-06-26 05:44:19 +00:00
ariadne	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
artemis	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
avida	Update to version 2.12.4	2012-10-30 17:53:39 +00:00
babel	- Mark conflict with science/openbabel	2012-12-11 14:24:51 +00:00
biococoa	- cleanup comments	2012-10-13 13:39:56 +00:00
biojava	Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP	2012-12-11 07:26:38 +00:00
blast	- Take maintainership	2012-10-01 14:55:55 +00:00
blat	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
boinc-simap	- Adjust BOINC_* variables to be consistent with new system in boinc-client	2012-05-16 13:46:30 +00:00
chemeq
clustalw
consed
crux
dotter	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
embassy	- Take maintainership	2012-10-01 14:55:55 +00:00
emboss	- Take maintainership	2012-10-01 14:55:55 +00:00
fasta
fasta3	- Take maintainership	2012-10-01 14:55:55 +00:00
fastdnaml
finchtv	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
fluctuate
garlic	Fix typos in COMMENT	2012-07-25 06:32:06 +00:00
genpak	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
gff2ps
gmap
gperiodic	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
grappa
hmmer	- Take maintainership	2012-10-01 14:55:55 +00:00
iolib
jalview	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
lagan	- Update to version 2.0	2012-11-15 07:04:29 +00:00
lamarc	- Fix build with clang	2012-12-03 11:27:47 +00:00
libgenome
libsbml
linux-foldingathome
mafft	Mark as broken on sparc64: depends on thread-local storage, which is not	2012-09-08 08:30:39 +00:00
mapm3
migrate
molden	- Update to version 5.0.2	2012-11-30 23:51:49 +00:00
mopac
mrbayes
mummer
muscle	Fix typos in COMMENT	2012-07-24 07:19:21 +00:00
ncbi-toolkit	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
njplot	s/X11BASE/LOCALBASE/, or equivalent.	2012-06-24 21:53:38 +00:00
ortep3
p5-AcePerl	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.4	2012-10-30 01:59:37 +00:00
p5-Bio-Glite	- Reset maintainer to perl@	2012-10-30 02:03:29 +00:00
p5-Bio-Graphics	Update to 2.31.	2012-12-07 13:49:15 +00:00
p5-Bio-MAGETAB	- Update to 1.26	2012-10-25 00:18:32 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo	- Update to 0.50	2012-06-12 18:55:28 +00:00
p5-Bio-SCF
p5-bioperl	- Take maintainership	2012-10-01 14:55:55 +00:00
p5-bioperl-run	- Remove SITE_PERL from *_DEPENDS	2012-06-30 14:53:22 +00:00
paml
phd2fasta
phrap
phred
phylip
phyml	- Reset MAINTAINER due to unrecoverable email bounce	2012-12-04 20:28:16 +00:00
platon
plink	Add new ports biology/plink [1] and biology/plinkseq [2]:	2012-09-27 09:59:25 +00:00
plinkseq	Add new ports biology/plink [1] and biology/plinkseq [2]:	2012-09-27 09:59:25 +00:00
povchem	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
primer3	- Take maintainership	2012-10-01 14:55:55 +00:00
protomol	Switch from libglut to freeglut and retire libglut. Libglut hasn't been	2012-08-04 22:52:02 +00:00
psi88
py-biopython	- update to 1.60	2012-09-25 08:06:42 +00:00
pycogent	- Update to 1.5.3	2012-10-08 03:17:02 +00:00
pyfasta
pymol	Switch from libglut to freeglut and retire libglut. Libglut hasn't been	2012-08-04 22:52:02 +00:00
python-nexus
rasmol
recombine
ruby-bio
seaview	- Update to version 4.4.0	2012-10-30 20:31:14 +00:00
seqan	Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.	2012-07-21 22:20:32 +00:00
seqio
sim4
ssaha	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
t_coffee	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
tinker	- Update to version 6.1.01	2012-12-01 00:00:43 +00:00
treepuzzle
treeviewx	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
tRNAscan-SE
velvet
wise
xdrawchem	science/openbabel:	2012-12-11 14:19:54 +00:00
xmolwt	- Support CC properly	2012-12-07 22:22:06 +00:00
Makefile	2012-11-26 benchmarks/gsbench: No more public distfiles	2012-11-28 09:05:54 +00:00