Kris Kennaway 5da5198ae4 Add missing file		2003-01-14 05:30:42 +00:00
..
artemis	Initial import of artemis 4.0	2001-12-22 14:39:40 +00:00
avida	Add some missing files	2003-01-14 03:39:21 +00:00
babel	update biology/babel to properly output mm3 files.	2003-01-03 08:52:41 +00:00
biojava	Unbreak this port:	2002-06-16 01:08:49 +00:00
chemeq	upgrade to V110-1	2002-04-21 13:33:29 +00:00
clustalw	- Add a new patch	2002-03-27 14:01:57 +00:00
coalesce
crimap	Add crimap 2.4, a tool for the creation of multilocus linkage maps.	2002-03-27 14:42:56 +00:00
deft	PERL -> REINPLACE	2002-11-04 05:46:38 +00:00
distribfold	Fix typo: distribfold.org -> distributedfolding.org	2002-12-19 18:33:55 +00:00
dna-qc	PERL -> REINPLACE	2002-11-04 05:46:38 +00:00
emboss	- Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)	2002-09-27 08:58:19 +00:00
fasta
fasta3	Prefer <limits.h> over <values.h> as the latter has been removed from	2002-08-23 03:36:33 +00:00
fastdnaml
flip	PERL -> REINPLACE	2002-11-04 05:46:38 +00:00
fluctuate
gaussian98	Remove USE_NEWGCC, which is no longer supported or required.	2002-08-31 02:38:29 +00:00
genpak	o Rollback PORTCOMMENT modifications while this feature's implementation	2002-11-10 16:48:51 +00:00
gff2ps	PERL -> REINPLACE	2002-11-04 01:56:21 +00:00
gperiodic	Deploy USE_GNOMENG infrastructure	2002-08-30 12:59:40 +00:00
grappa	- Update to version 1.0.3	2001-08-29 11:53:29 +00:00
hmmer	- Add patch that will, for -CURRENT only, change: -pthread -> -lc_r	2002-07-11 10:52:14 +00:00
kinemage
L-Breeder	Mark BROKEN due to "Unknown problem"	2002-11-25 02:11:13 +00:00
lamarc	Add lamarc 2001.08.06,	2001-08-07 08:17:58 +00:00
libgenome	add missing include	2002-12-29 04:44:13 +00:00
migrate	- Update to version 1.2.4	2001-08-22 14:43:45 +00:00
molden	Update to 3.8	2003-01-08 12:05:57 +00:00
mopac
nab	PERL -> REINPLACE	2002-11-04 01:56:21 +00:00
ncbi-toolkit	add forgotten "USE_REINPLACE=yes"	2002-09-21 14:56:18 +00:00
nclever	Add nclever 4.0, a character-based version of NCBI's Entrez program.	2001-09-26 09:22:02 +00:00
ortep3
p5-AcePerl	CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' in	2002-10-10 12:59:36 +00:00
p5-bioperl	- Update to version 0.7.2, somewhat overdue. :-)	2002-01-25 11:46:09 +00:00
p5-bioperl-devel	- Add NO_LATEST_LINK, which should've been there in the first place. :-(	2001-09-20 15:11:14 +00:00
paml	- Update to version 3.1	2001-08-29 12:00:08 +00:00
phylip	Update to version 3.6.a3.	2002-08-13 16:07:45 +00:00
pkg
platon
povchem	PERL -> REINPLACE	2002-11-04 02:35:01 +00:00
primer3	Updated to fix problems as stated in PR ports/42915	2002-11-07 13:45:17 +00:00
psi88	update WWW and master site	2001-10-22 06:36:14 +00:00
py-biopython	Use $PYNUMERIC in the dependencies.	2002-07-15 11:37:35 +00:00
pymol	1. add a missing dependency on png and unbreak.	2002-11-19 23:01:49 +00:00
rasmol	o Rollback PORTCOMMENT modifications while this feature's implementation	2002-11-10 16:48:51 +00:00
recombine
ruby-bio	Use RUBY_MOD*.	2002-10-06 21:08:30 +00:00
seaview	unbroke by upgrade to 20021018	2002-11-20 14:03:25 +00:00
seqio	Remove a redundant trailing space.	2001-10-21 07:55:45 +00:00
sim4	Update to sim4-2002.03.03 to unbreak build.	2002-05-04 21:45:10 +00:00
spdbv	upgrade to 3.7	2003-01-02 03:57:58 +00:00
t_coffee	Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.	2002-01-25 14:58:16 +00:00
tinker	Upgrade tinker to the latest revision	2002-01-19 15:15:16 +00:00
treepuzzle	add treepuzzle 5.1	2002-11-20 08:54:10 +00:00
treeviewx	Chase new name of wxgtk shared library.	2002-09-09 14:21:08 +00:00
tRNAscan-SE	Port needs perl to build.	2002-11-04 01:47:57 +00:00
wise	Add missing file	2003-01-14 05:30:42 +00:00
xdrawchem	Use ${ECHO_CMD} instead of ${ECHO} where you mean the echo command;	2002-01-29 09:39:59 +00:00
xmolwt	Deploy USE_GNOMENG infrastructure	2002-08-30 12:59:40 +00:00
Makefile	add treepuzzle 5.1	2002-11-20 08:54:10 +00:00